ggKbase home page

GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_1
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

92..1222
DNA (1131bp) protein (377aa)
Uncharacterized protein id=3727819 bin=GWF2_Lentisphaerae_50_93 species=Opitutaceae bacterium TAV1 genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein Tax=GWF2_Lentisphaerae_50_93_curated
hypothetical protein
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_2
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

1219..2499
DNA (1281bp) protein (427aa)
Glycoside hydrolase family 10 id=3727820 bin=GWF2_Lentisphaerae_50_93 species=Opitutaceae bacterium TAV5 genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
glycoside hydrolase family 10 Tax=GWF2_Lentisphaerae_50_93_curated
glycoside hydrolase family 10
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_3
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

2501..2821
DNA (321bp) protein (107aa)
id=3727821 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
id=3727821 Tax=GWF2_Lentisphaerae_50_93_curated
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_4
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(2780..3148)
DNA (369bp) protein (123aa)
id=3727822 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
id=3727822 Tax=GWF2_Lentisphaerae_50_93_curated
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_5
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

3222..4313
DNA (1092bp) protein (364aa)
id=3727823 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
id=3727823 Tax=GWF2_Lentisphaerae_50_93_curated
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_6
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

4656..4745
DNA (90bp) protein (30aa)
Tax=GWF2_Lentisphaerae_50_93_curated
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_7
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

5141..6298
DNA (1158bp) protein (386aa)
Putative GntR family transcriptional regulator id=3727825 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
Putative GntR family transcriptional regulator Tax=GWF2_Lentisphaerae_50_93_curated
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_8
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

6317..7219
DNA (903bp) protein (301aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein id=3727826 bin=GWF2_Lentisphaerae_50_93 species=Opitutaceae bacterium TAV1 genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
prepilin-type N-terminal cleavage/methylation domain Tax=GWF2_Lentisphaerae_50_93_curated
prepilin-type N-terminal cleavage/methylation domain
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_9
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

7255..8397
DNA (1143bp) protein (381aa)
oligogalacturonide lyase (EC:4.2.2.6); K01730 oligogalacturonide lyase [EC:4.2.2.6] Tax=GWF2_Lentisphaerae_50_93_curated
oligogalacturonide lyase (EC:4.2.2.6)
Oligogalacturonide lyase id=3727827 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_10
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

8467..11499
DNA (3033bp) protein (1011aa)
carbohydrate-binding family 9 Tax=GWF2_Lentisphaerae_50_93_curated
Beta-1,4-xylanase id=3727828 bin=GWF2_Lentisphaerae_50_93 species=Opitutaceae bacterium TAV1 genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_11
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(11889..13193)
DNA (1305bp) protein (435aa)
id=3727829 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
id=3727829 Tax=GWF2_Lentisphaerae_50_93_curated
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_12
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(13357..14067)
DNA (711bp) protein (237aa)
id=3727830 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
id=3727830 Tax=GWF2_Lentisphaerae_50_93_curated
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_13
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(14098..15183)
DNA (1086bp) protein (362aa)
Malate dehydrogenase id=3727831 bin=GWF2_Lentisphaerae_50_93 species=Desulfotomaculum ruminis genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
malate dehydrogenase Tax=GWF2_Lentisphaerae_50_93_curated
malate dehydrogenase
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_14
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(15303..15602)
DNA (300bp) protein (100aa)
Putative uncharacterized protein id=3727835 bin=GWF2_Lentisphaerae_50_93 species=Lentisphaera araneosa genus=Lentisphaera taxon_order=Lentisphaerales taxon_class=Lentisphaeria phylum=Lentisphaerae tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
plasmid stabilization system Tax=GWF2_Lentisphaerae_50_93_curated
plasmid stabilization system
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_15
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(15590..15784)
DNA (195bp) protein (65aa)
Putative uncharacterized protein id=3727837 bin=GWF2_Lentisphaerae_50_93 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein Tax=GWF2_Lentisphaerae_50_93_curated
hypothetical protein
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_16
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(15835..16713)
DNA (879bp) protein (293aa)
YfiF id=3727839 bin=GWF2_Lentisphaerae_50_93 species=Carnobacterium sp. AT7 genus=Carnobacterium taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
AraC family transcriptional regulator Tax=GWF2_Lentisphaerae_50_93_curated
transcriptional regulator with only HTH domain, AraC family
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_17
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

16872..17675
DNA (804bp) protein (268aa)
Alpha/beta hydrolase fold protein id=3727841 bin=GWF2_Lentisphaerae_50_93 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
prolyl oligopeptidase family protein Tax=GWF2_Lentisphaerae_50_93_curated
prolyl oligopeptidase family protein
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_18
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

17730..18839
DNA (1110bp) protein (370aa)
Alcohol dehydrogenase id=3727843 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
alcohol dehydrogenase Tax=GWF2_Lentisphaerae_50_93_curated
alcohol dehydrogenase
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_19
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

18982..21057
DNA (2076bp) protein (692aa)
glycerol dehydratase; K00656 formate C-acetyltransferase [EC:2.3.1.54] Tax=GWF2_Lentisphaerae_50_93_curated
pyruvate formate-lyase (EC:2.3.1.54)
Pyruvate formate-lyase id=3727846 bin=GWF2_Lentisphaerae_50_93 species=Pelosinus fermentans genus=Pelosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_20
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

21173..23878
DNA (2706bp) protein (902aa)
Uncharacterized protein id=3727849 bin=GWF2_Lentisphaerae_50_93 species=Blastopirellula marina genus=Blastopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein Tax=GWF2_Lentisphaerae_50_93_curated
hypothetical protein
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_21
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

23896..26322
DNA (2427bp) protein (809aa)
hypothetical protein Tax=GWF2_Lentisphaerae_50_93_curated
Putative uncharacterized protein id=3727853 bin=GWF2_Lentisphaerae_50_93 species=Opitutaceae bacterium TAV1 genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_22
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(26453..27127)
DNA (675bp) protein (225aa)
Putative uncharacterized protein id=3727933 bin=GWF2_Lentisphaerae_50_93 species=Stenotrophomonas maltophilia genus=Stenotrophomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein Tax=GWF2_Lentisphaerae_50_93_curated
hypothetical protein
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_23
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

27352..28248
DNA (897bp) protein (299aa)
id=3727936 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
id=3727936 Tax=GWF2_Lentisphaerae_50_93_curated
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_24
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

28384..30036
DNA (1653bp) protein (551aa)
ABC transporter substrate-binding protein
Extracellular solute-binding protein family 1 Tax=GWF2_Lentisphaerae_50_93_curated
Extracellular solute-binding protein family 1 id=3727939 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_25
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

30085..32112
DNA (2028bp) protein (676aa)
sugar ABC transporter permease Tax=GWF2_Lentisphaerae_50_93_curated
Binding-protein-dependent transport systems inner membrane component id=3727941 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
ABC transporter permease
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_26
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(32186..32794)
DNA (609bp) protein (203aa)
ruvA; Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] Tax=GWF2_Lentisphaerae_50_93_curated
Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_242 id=3727944 bin=GWF2_Lentisphaerae_50_93 species=Oikopleura dioica genus=Oikopleura taxon_order=unknown taxon_class=Appendicularia phylum=Chordata tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
ruvA; Holliday junction DNA helicase RuvA
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_27
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(33318..34247)
DNA (930bp) protein (310aa)
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; K12251 N-carbamoylputrescine amidase [EC:3.5.1.53] Tax=GWF2_Lentisphaerae_50_93_curated
N-carbamylputrescine amidohydrolase id=3727947 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_28
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(34310..35338)
DNA (1029bp) protein (343aa)
agmatine deiminase (EC:3.5.3.12); K10536 agmatine deiminase [EC:3.5.3.12] Tax=GWF2_Lentisphaerae_50_93_curated
agmatine deiminase (EC:3.5.3.12)
Agmatine deiminase id=3727949 bin=GWF2_Lentisphaerae_50_93 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_29
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(35328..36032)
DNA (705bp) protein (235aa)
Predicted pyridoxal 5'-phosphate-dependent enzyme id=3727951 bin=GWF2_Lentisphaerae_50_93 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
pyridoxal 5'-phosphate-dependent enzyme; K06997 Tax=GWF2_Lentisphaerae_50_93_curated
pyridoxal 5'-phosphate-dependent enzyme
GWF2_Lentisphaerae_50_93_gwf2_scaffold_2080_30
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(36087..37064)
DNA (978bp) protein (326aa)
Leucyl aminopeptidase (Aminopeptidase T) id=3727953 bin=GWF2_Lentisphaerae_50_93 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
leucyl aminopeptidase Tax=GWF2_Lentisphaerae_50_93_curated
leucyl aminopeptidase
Displaying items 1-30 of 45 in total

View Taxonomy