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GWF2_Nitrospirae_44_13_gwf2_scaffold_2083

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Displaying items 1-30 of 36 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_1
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

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2..592
DNA (591bp) protein (197aa)
Rod shape-determining protein RodA id=3728693 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
mrdB; rod shape-determining protein RodA; K05837 rod shape determining protein RodA Tax=GWF2_Nitrospirae_44_13_curated
mrdB; rod shape-determining protein RodA
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_trna_1
unknown

Not on your lists

699..772
DNA (74bp)
transferRNA
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_2
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

861..1568
DNA (708bp) protein (236aa)
Two component transcriptional regulator, winged helix family id=3728694 bin=GWF2_Nitrospirae_44_13 species=Calditerrivibrio nitroreducens genus=Calditerrivibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
two component transcriptional regulator, winged helix family; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB Tax=GWF2_Nitrospirae_44_13_curated
winged helix family two component transcriptional regulator
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_3
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(1636..2190)
DNA (555bp) protein (185aa)
pth; peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] Tax=GWF2_Nitrospirae_44_13_curated
pth; peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase id=3728695 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_4
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists


comp(2191..2880)
DNA (690bp) protein (230aa)
50S ribosomal protein L25 id=3728696 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
ribosomal protein L25, Ctc-form; K02897 large subunit ribosomal protein L25 Tax=GWF2_Nitrospirae_44_13_curated
50S ribosomal protein L25, Ctc-form
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_5
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(2921..3862)
DNA (942bp) protein (314aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] Tax=GWF2_Nitrospirae_44_13_curated
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase id=3728697 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_6
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(4032..4874)
DNA (843bp) protein (281aa)
ispE; 4-diphosphocytidyl-2C-methyl-D-erythritol kinase (EC:2.7.1.148); K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] Tax=GWF2_Nitrospirae_44_13_curated
ispE; 4-diphosphocytidyl-2C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase id=3728698 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_7
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(4915..6615)
DNA (1701bp) protein (567aa)
TPR domain protein Tax=GWF2_Nitrospirae_44_13_curated
TPR domain protein, putative id=3728699 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
TPR domain-containing protein
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_8
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

6723..7940
DNA (1218bp) protein (406aa)
ABC transporter, permease protein id=3728700 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
ABC transporter permease; K09808 lipoprotein-releasing system permease protein Tax=GWF2_Nitrospirae_44_13_curated
ABC transporter permease
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_9
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

7966..8628
DNA (663bp) protein (221aa)
lolD; lipoprotein-releasing system, ATP-binding protein lolD (EC:3.6.3.-); K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] Tax=GWF2_Nitrospirae_44_13_curated
lolD; lipoprotein-releasing system, ATP-binding protein lolD (EC:3.6.3.-)
ABC transporter related protein id=3728701 bin=GWF2_Nitrospirae_44_13 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_10
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

8778..9110
DNA (333bp) protein (111aa)
Putative uncharacterized protein id=3728702 bin=GWF2_Nitrospirae_44_13 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein Tax=GWF2_Nitrospirae_44_13_curated
hypothetical protein
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_11
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

9305..10774
DNA (1470bp) protein (490aa)
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205); K00088 IMP dehydrogenase [EC:1.1.1.205] Tax=GWF2_Nitrospirae_44_13_curated
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase id=3728703 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_12
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(10775..11860)
DNA (1086bp) protein (362aa)
GTP-binding protein YchF id=3728787 bin=GWF2_Nitrospirae_44_13 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
ychF; GTP-dependent nucleic acid-binding protein EngD; K06942 Tax=GWF2_Nitrospirae_44_13_curated
ychF; GTP-dependent nucleic acid-binding protein EngD
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_13
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(11892..12947)
DNA (1056bp) protein (352aa)
ruvB; holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] Tax=GWF2_Nitrospirae_44_13_curated
Holliday junction ATP-dependent DNA helicase RuvB id=3728788 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
ruvB; holliday junction DNA helicase RuvB
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_14
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(12937..13518)
DNA (582bp) protein (194aa)
Holliday junction ATP-dependent DNA helicase RuvA id=3728789 bin=GWF2_Nitrospirae_44_13 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
ruvA; Holliday junction DNA helicase ruvA Tax=GWF2_Nitrospirae_44_13_curated
ruvA; Holliday junction DNA helicase ruvA
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_15
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(13518..17018)
DNA (3501bp) protein (1167aa)
chromosome segregation protein SMC; K03529 chromosome segregation protein Tax=GWF2_Nitrospirae_44_13_curated
Chromosome partition protein Smc id=3728790 bin=GWF2_Nitrospirae_44_13 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
chromosome segregation protein SMC
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_16
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(17202..18227)
DNA (1026bp) protein (342aa)
Putative uncharacterized protein id=3728791 bin=GWF2_Nitrospirae_44_13 species=Synechococcus sp. genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein Tax=GWF2_Nitrospirae_44_13_curated
hypothetical protein
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_17
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(18369..19553)
DNA (1185bp) protein (395aa)
threonine dehydratase; K01754 threonine dehydratase [EC:4.3.1.19] Tax=GWF2_Nitrospirae_44_13_curated
Threonine dehydratase id=3728792 bin=GWF2_Nitrospirae_44_13 species=unknown genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
threonine dehydratase
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_18
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(19696..20817)
DNA (1122bp) protein (374aa)
Radical SAM domain protein id=3728793 bin=GWF2_Nitrospirae_44_13 species=Sphaerochaeta globosa genus=Sphaerochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
radical SAM protein Tax=GWF2_Nitrospirae_44_13_curated
radical SAM protein
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_19
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

21066..21839
DNA (774bp) protein (258aa)
Methyltransferase domain protein id=3728794 bin=GWF2_Nitrospirae_44_13 species=unknown genus=Anaerostipes taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein Tax=GWF2_Nitrospirae_44_13_curated
hypothetical protein
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_20
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

21836..22624
DNA (789bp) protein (263aa)
Uncharacterized isomerase BH0283 id=3728795 bin=GWF2_Nitrospirae_44_13 species=Bacillus halodurans genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein; K06998 Tax=GWF2_Nitrospirae_44_13_curated
Phenazine biosynthesis protein PhzF
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_21
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

22664..23500
DNA (837bp) protein (279aa)
Nitroreductase id=3728796 bin=GWF2_Nitrospirae_44_13 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
nitroreductase Tax=GWF2_Nitrospirae_44_13_curated
nitroreductase
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_22
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

23497..23733
DNA (237bp) protein (79aa)
id=3728797 bin=GWF2_Nitrospirae_44_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
id=3728797 Tax=GWF2_Nitrospirae_44_13_curated
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_23
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

23763..24584
DNA (822bp) protein (274aa)
Methyltransferase type 11 id=3728798 bin=GWF2_Nitrospirae_44_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
type 11 methyltransferase Tax=GWF2_Nitrospirae_44_13_curated
type 11 methyltransferase
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_24
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

24684..25496
DNA (813bp) protein (271aa)
Uncharacterized protein id=3728799 bin=GWF2_Nitrospirae_44_13 species=Desulfosporosinus orientis genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein Tax=GWF2_Nitrospirae_44_13_curated
hypothetical protein
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_25
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

25583..26014
DNA (432bp) protein (144aa)
Putative uncharacterized protein id=3728800 bin=GWF2_Nitrospirae_44_13 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein Tax=GWF2_Nitrospirae_44_13_curated
hypothetical protein
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_26
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

26052..26966
DNA (915bp) protein (305aa)
Beta-lactamase domain protein id=3728801 bin=GWF2_Nitrospirae_44_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
beta-lactamase domain-containing protein Tax=GWF2_Nitrospirae_44_13_curated
beta-lactamase domain-containing protein
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_27
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

26985..27290
DNA (306bp) protein (102aa)
Uncharacterized protein id=3728802 bin=GWF2_Nitrospirae_44_13 species=Sinorhizobium fredii genus=Sinorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
NIPSNAP family containing protein Tax=GWF2_Nitrospirae_44_13_curated
NIPSNAP family containing protein
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_28
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

27309..27644
DNA (336bp) protein (112aa)
Cupin 2 conserved barrel domain protein id=3728803 bin=GWF2_Nitrospirae_44_13 species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
cupin superfamily barrel domain-containing protein Tax=GWF2_Nitrospirae_44_13_curated
cupin superfamily barrel domain-containing protein
GWF2_Nitrospirae_44_13_gwf2_scaffold_2083_29
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(27827..28027)
DNA (201bp) protein (67aa)
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=GWF2_Nitrospirae_44_13_curated
Cold shock-like protein cspLA id=2027333 bin=GWB2_Nitrospirae_rel_47_37 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
cold-shock DNA-binding domain-containing protein
Displaying items 1-30 of 36 in total

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