ggKbase home page

GWF2_RBX1_38_17_gwf2_scaffold_3158

Search features with annotation key words

Displaying 27 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWF2_RBX1_38_17_gwf2_scaffold_3158_1
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

240..1289
DNA (1050bp) protein (350aa)
id=24609199 bin=RAAC11 tax=RAAC11 organism_group=Unknown_CP
id=24609199 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_3158_2
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(1441..1716)
DNA (276bp) protein (92aa)
id=24609200 bin=RAAC11 tax=RAAC11 organism_group=Unknown_CP
id=24609200 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_3158_3
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

2127..3251
DNA (1125bp) protein (375aa)
putative RNA methylase; K07444 putative N6-adenine-specific DNA methylase [EC:2.1.1.-] Tax=GWF2_RBX1_38_17_curated
Methyltransferase id=4014091 bin=GWF2_OP9-related_38_17 species=unknown genus=Fusobacterium taxon_order=Fusobacteriales taxon_class=Fusobacteriia phylum=Fusobacteria tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
putative RNA methylase
GWF2_RBX1_38_17_gwf2_scaffold_3158_4
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(3332..3808)
DNA (477bp) protein (159aa)
id=2153684 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2153684 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_3158_5
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

4106..4819
DNA (714bp) protein (238aa)
CAAX amino terminal protease family protein id=2153682 bin=GWE2_RBX1_39_32 species=Myxococcus fulvus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
CAAX amino terminal protease family protein Tax=GWF2_RBX1_38_17_curated
CAAX amino terminal protease family protein
GWF2_RBX1_38_17_gwf2_scaffold_3158_6
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(4841..5710)
DNA (870bp) protein (290aa)
Ribonuclease BN id=4014135 bin=GWF2_OP9-related_38_17 species=unknown genus=Lyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
ribonuclease BN Tax=GWF2_RBX1_38_17_curated
ribonuclease BN
GWF2_RBX1_38_17_gwf2_scaffold_3158_7
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

6069..7766
DNA (1698bp) protein (566aa)
Digeranylgeranylglycerophospholipid reductase id=4014138 bin=GWF2_OP9-related_38_17 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
geranylgeranyl reductase family protein Tax=GWF2_RBX1_38_17_curated
geranylgeranyl reductase family protein
GWF2_RBX1_38_17_gwf2_scaffold_3158_8
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

7849..8973
DNA (1125bp) protein (375aa)
Hydrogenase formation HypD protein id=4014142 bin=GWF2_OP9-related_38_17 species=Neptuniibacter caesariensis genus=Neptuniibacter taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
hypD_[H]; [NiFe] hydrogenase metallocenter assembly protein HypD Tax=GWF2_RBX1_38_17_curated
hypD; hydrogenase expression/formation protein HypD
GWF2_RBX1_38_17_gwf2_scaffold_3158_9
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

8970..10667
DNA (1698bp) protein (566aa)
hoxX; hydrogenase maturation factor hoxX (EC:2.1.2.9); K00936 [EC:2.7.3.-] id=24609207 bin=RAAC11 species=unknown genus=unknown taxon_order=unknown taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=RAAC11 organism_group=Unknown_CP
hoxX; hydrogenase maturation factor hoxX (EC:2.1.2.9); K00936 [EC:2.7.3.-] Tax=GWF2_RBX1_38_17_curated
hoxX; hydrogenase maturation factor hoxX (EC:2.1.2.9)
GWF2_RBX1_38_17_gwf2_scaffold_3158_10
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

10735..11241
DNA (507bp) protein (169aa)
Putative adenylate/guanylate cyclase id=2153668 bin=GWE2_RBX1_39_32 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
putative PAS/PAC sensor protein Tax=GWF2_RBX1_38_17_curated
putative PAS/PAC sensor protein
GWF2_RBX1_38_17_gwf2_scaffold_3158_11
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

11313..12197
DNA (885bp) protein (295aa)
Putative uncharacterized protein id=4014149 bin=GWF2_OP9-related_38_17 species=Methanosarcina acetivorans genus=Methanosarcina taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWF2_RBX1_38_17_gwf2_scaffold_3158_12
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

12377..14563
DNA (2187bp) protein (729aa)
recQ; ATP-dependent DNA helicase RecQ (EC:3.6.1.-); K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12] Tax=GWF2_RBX1_38_17_curated
recQ; ATP-dependent DNA helicase RecQ (EC:3.6.1.-)
ATP-dependent DNA helicase RecQ id=2153664 bin=GWE2_RBX1_39_32 species=Clostridium perfringens genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWF2_RBX1_38_17_gwf2_scaffold_3158_13
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(14586..15389)
DNA (804bp) protein (268aa)
Toxin A id=2153635 bin=GWE2_RBX1_39_32 species=Brachyspira pilosicoli genus=Brachyspira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWF2_RBX1_38_17_gwf2_scaffold_3158_14
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

15670..16866
DNA (1197bp) protein (399aa)
Major facilitator superfamily transporter id=2027256 bin=GWD2_RBX1-related_39_127 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
major facilitator superfamily transporter Tax=GWF2_RBX1_38_17_curated
major facilitator superfamily transporter
GWF2_RBX1_38_17_gwf2_scaffold_3158_15
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

16880..17761
DNA (882bp) protein (294aa)
Leucine-rich repeat protein id=2153629 bin=GWE2_RBX1_39_32 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
leucine-rich repeat protein Tax=GWF2_RBX1_38_17_curated
leucine-rich repeat protein
GWF2_RBX1_38_17_gwf2_scaffold_3158_16
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

18033..19232
DNA (1200bp) protein (400aa)
DEAD/DEAH box helicase domain protein id=2153626 bin=GWE2_RBX1_39_32 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
ATP-dependent RNA helicase RhlE Tax=GWF2_RBX1_38_17_curated
rhlE-2; ATP-dependent RNA helicase RhlE
GWF2_RBX1_38_17_gwf2_scaffold_3158_17
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

19505..20869
DNA (1365bp) protein (455aa)
putative maltodextrin glucosidase id=4014168 bin=GWF2_OP9-related_38_17 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
glycosidase Tax=GWF2_RBX1_38_17_curated
glycosidase
GWF2_RBX1_38_17_gwf2_scaffold_3158_18
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(20899..21213)
DNA (315bp) protein (105aa)
Signal peptidase id=2027289 bin=GWD2_RBX1-related_39_127 species=Methanobacterium formicicum genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWF2_RBX1_38_17_gwf2_scaffold_3158_19
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(21250..21951)
DNA (702bp) protein (234aa)
Glutamine amidotransferases class-II id=4014171 bin=GWF2_OP9-related_38_17 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
glutamine amidotransferases class-II; K07008 glutamine amidotransferase Tax=GWF2_RBX1_38_17_curated
glutamine amidotransferases class-II
GWF2_RBX1_38_17_gwf2_scaffold_3158_20
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(21955..22485)
DNA (531bp) protein (177aa)
Spore maturation protein B id=2027291 bin=GWD2_RBX1-related_39_127 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
spore maturation protein B; K06374 spore maturation protein B Tax=GWF2_RBX1_38_17_curated
spore maturation protein B
GWF2_RBX1_38_17_gwf2_scaffold_3158_21
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(22482..23057)
DNA (576bp) protein (192aa)
hypothetical protein; K06373 spore maturation protein A id=24609219 bin=RAAC11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RAAC11 organism_group=Unknown_CP
hypothetical protein; K06373 spore maturation protein A Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWF2_RBX1_38_17_gwf2_scaffold_3158_22
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(23054..23920)
DNA (867bp) protein (289aa)
peptidase U61 LD-carboxypeptidase A; K01297 muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] Tax=GWF2_RBX1_38_17_curated
Peptidase U61 LD-carboxypeptidase A id=2153606 bin=GWE2_RBX1_39_32 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
peptidase U61 LD-carboxypeptidase A
GWF2_RBX1_38_17_gwf2_scaffold_3158_23
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

24191..25987
DNA (1797bp) protein (599aa)
amiA; N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28) Tax=GWF2_RBX1_38_17_curated
amiA; N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase id=2153603 bin=GWE2_RBX1_39_32 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWF2_RBX1_38_17_gwf2_scaffold_3158_24
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(26004..26378)
DNA (375bp) protein (125aa)
Two component transcriptional regulator, winged helix family id=2153600 bin=GWE2_RBX1_39_32 species=Afipia sp. 1NLS2 genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
two component transcriptional regulator, winged helix family; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR Tax=GWF2_RBX1_38_17_curated
winged helix family two component transcriptional regulator
GWF2_RBX1_38_17_gwf2_scaffold_3158_25
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(26729..26836)
DNA (108bp) protein (36aa)
id=24609223 bin=RAAC11 tax=RAAC11 organism_group=Unknown_CP
id=24609223 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_3158_26
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(27001..27936)
DNA (936bp) protein (312aa)
hypothetical protein id=24609224 bin=RAAC11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=RAAC11 organism_group=Unknown_CP
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWF2_RBX1_38_17_gwf2_scaffold_3158_27
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(27933..28796)
DNA (864bp) protein (288aa)
ATP/GTP-binding protein id=4014185 bin=GWF2_OP9-related_38_17 species=Anabaena sp. 90 genus=Anabaena taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
ATP/GTP-binding protein Tax=GWF2_RBX1_38_17_curated
ATP/GTP-binding protein
Displaying 27 items

View Taxonomy