ggKbase home page

GWF2_RBX1_38_17_gwf2_scaffold_1888

Search features with annotation key words

Displaying 29 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWF2_RBX1_38_17_gwf2_scaffold_1888_1
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(118..2244)
DNA (2127bp) protein (709aa)
glucosylceramidase (EC:3.2.1.45) Tax=GWF2_RBX1_38_17_curated
glucosylceramidase (EC:3.2.1.45)
Glucosylceramidase id=3633227 bin=GWF2_OP9-related_38_17 species=Thermoanaerobacterium xylanolyticum genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
GWF2_RBX1_38_17_gwf2_scaffold_1888_2
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(2532..5081)
DNA (2550bp) protein (850aa)
id=2119460 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2119460 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_1888_3
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(5120..6979)
DNA (1860bp) protein (620aa)
Viral A-type inclusion protein repeat, putative id=2119461 bin=GWE2_RBX1_39_32 species=Entamoeba histolytica genus=Entamoeba taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
82.t00025; Viral A-type inclusion protein repeat Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWF2_RBX1_38_17_gwf2_scaffold_1888_4
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(7420..8106)
DNA (687bp) protein (229aa)
id=2119464 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2119464 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_1888_5
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(8103..9197)
DNA (1095bp) protein (365aa)
translation initiation factor, aIF-2BI family (EC:5.3.1.23); K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23] Tax=GWF2_RBX1_38_17_curated
translation initiation factor, aIF-2BI family (EC:5.3.1.23)
Putative methylthioribose-1-phosphate isomerase id=2119466 bin=GWE2_RBX1_39_32 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWF2_RBX1_38_17_gwf2_scaffold_1888_6
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

9463..10077
DNA (615bp) protein (205aa)
Putative uncharacterized protein id=2119469 bin=GWE2_RBX1_39_32 species=Pantoea sp. genus=Pantoea taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
HAD superfamily hydrolase; K07025 putative hydrolase of the HAD superfamily Tax=GWF2_RBX1_38_17_curated
HAD superfamily hydrolase
GWF2_RBX1_38_17_gwf2_scaffold_1888_7
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(10134..12446)
DNA (2313bp) protein (771aa)
Glutamate synthase (NADPH) (EC:1.4.1.13)
Glutamate synthase alpha subunit domain protein id=2119472 bin=GWE2_RBX1_39_32 species=Pelosinus fermentans genus=Pelosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
glutamate synthase subunit alpha Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_1888_8
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(12457..14097)
DNA (1641bp) protein (547aa)
gltB; putative glutamate synthase (NADPH) large chain (EC:1.4.1.13); K00265 glutamate synthase (NADPH/NADH) large chain [EC:1.4.1.13 1.4.1.14] Tax=GWF2_RBX1_38_17_curated
Glutamate synthase (NADPH) (EC:1.4.1.13)
Ferredoxin-dependent glutamate synthase id=2119475 bin=GWE2_RBX1_39_32 species=Pelosinus fermentans genus=Pelosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWF2_RBX1_38_17_gwf2_scaffold_1888_9
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(14085..15191)
DNA (1107bp) protein (369aa)
Glutamate synthase id=2119478 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWF2_RBX1_38_17_gwf2_scaffold_1888_trna_1
unknown

Not on your lists

15469..15542
DNA (74bp)
transferRNA
GWF2_RBX1_38_17_gwf2_scaffold_1888_10
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(15660..16682)
DNA (1023bp) protein (341aa)
Integrase family protein id=3633338 bin=GWF2_OP9-related_38_17 species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
integrase family protein Tax=GWF2_RBX1_38_17_curated
integrase family protein
GWF2_RBX1_38_17_gwf2_scaffold_1888_11
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(16755..16949)
DNA (195bp) protein (65aa)
DNA-binding protein id=2119484 bin=GWE2_RBX1_39_32 species=Clostridium perfringens genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
DNA-binding protein Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_1888_12
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

16986..17804
DNA (819bp) protein (273aa)
id=2119486 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2119486 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_1888_13
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

18018..18305
DNA (288bp) protein (96aa)
id=2119488 bin=GWE2_RBX1_39_32 species=ACD22 genus=ACD22 taxon_order=ACD22 taxon_class=ACD22 phylum=WWE3 tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWF2_RBX1_38_17_gwf2_scaffold_1888_14
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

18289..18507
DNA (219bp) protein (73aa)
id=2119489 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2119489 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_1888_15
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

18504..18776
DNA (273bp) protein (91aa)
DNA primase, catalytic core (EC:2.7.7.-) Tax=GWF2_RBX1_38_17_curated
DNA primase, catalytic core (EC:2.7.7.-)
DNA primase id=3633346 bin=GWF2_OP9-related_38_17 species=Faecalibacterium prausnitzii genus=Faecalibacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
GWF2_RBX1_38_17_gwf2_scaffold_1888_16
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

18773..20758
DNA (1986bp) protein (662aa)
hypothetical protein CNitlB_11499 id=3633348 bin=GWF2_OP9-related_38_17 species=uncultured marine crenarchaeote HF4000_ANIW141J13 genus=unknown taxon_order=Nitrosopumilales taxon_class=unknown phylum=Thaumarchaeota tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWF2_RBX1_38_17_gwf2_scaffold_1888_17
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

20746..20889
DNA (144bp) protein (48aa)
id=2119495 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2119495 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_1888_18
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(20988..21416)
DNA (429bp) protein (143aa)
id=2119496 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2119496 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_1888_19
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(21502..21861)
DNA (360bp) protein (120aa)
id=2119498 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2119498 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_1888_20
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(21858..22091)
DNA (234bp) protein (78aa)
id=2119500 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2119500 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_1888_21
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(22180..22458)
DNA (279bp) protein (93aa)
Putative uncharacterized protein id=2119501 bin=GWE2_RBX1_39_32 species=Leptospirillum sp. Group II '5-way CG' genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWF2_RBX1_38_17_gwf2_scaffold_1888_22
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

22625..22843
DNA (219bp) protein (73aa)
DNA-binding protein id=2119505 bin=GWE2_RBX1_39_32 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
DNA-binding protein Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_1888_23
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

22954..23565
DNA (612bp) protein (204aa)
UPI0002971EA7 related cluster id=2119509 bin=GWE2_RBX1_39_32 species=Thermus oshimai genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWF2_RBX1_38_17_gwf2_scaffold_1888_24
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(24129..24632)
DNA (504bp) protein (168aa)
id=2119513 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2119513 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_1888_25
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

25342..26037
DNA (696bp) protein (232aa)
id=2119514 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2119514 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_1888_26
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(26234..26815)
DNA (582bp) protein (194aa)
id=2119516 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2119516 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_1888_27
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(26914..28725)
DNA (1812bp) protein (604aa)
Multi-sensor signal transduction histidine kinase id=2119517 bin=GWE2_RBX1_39_32 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
multi-sensor signal transduction histidine kinase Tax=GWF2_RBX1_38_17_curated
multi-sensor signal transduction histidine kinase
GWF2_RBX1_38_17_gwf2_scaffold_1888_28
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(28794..30107)
DNA (1314bp) protein (438aa)
hypothetical protein id=24610900 bin=RAAC11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=RAAC11 organism_group=Unknown_CP
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
Displaying 29 items

View Taxonomy