ggKbase home page

GWF2_RBX1_38_17_gwf2_scaffold_4892

Search features with annotation key words

Displaying 20 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWF2_RBX1_38_17_gwf2_scaffold_4892_1
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(1..1062)
DNA (1062bp) protein (354aa)
amidase id=4250241 bin=GWF2_OP9-related_38_17 species=Paenibacillus elgii genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
S-layer domain-containing protein Tax=GWF2_RBX1_38_17_curated
cell surface glycoprotein 2
GWF2_RBX1_38_17_gwf2_scaffold_4892_2
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(1250..1921)
DNA (672bp) protein (224aa)
Soluble lytic murein transglycosylase-like protein id=1981601 bin=GWE2_RBX1_39_32 species=Clostridium clariflavum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
lytic murein transglycosylase Tax=GWF2_RBX1_38_17_curated
lytic murein transglycosylase
GWF2_RBX1_38_17_gwf2_scaffold_4892_3
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists


comp(1921..3624)
DNA (1704bp) protein (568aa)
proS; prolyl-tRNA synthetase (EC:6.1.1.15); K01881 prolyl-tRNA synthetase [EC:6.1.1.15] Tax=GWF2_RBX1_38_17_curated
proS; prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase id=4250245 bin=GWF2_OP9-related_38_17 species=Deferribacter desulfuricans genus=Deferribacter taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
GWF2_RBX1_38_17_gwf2_scaffold_4892_4
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists


comp(3657..5441)
DNA (1785bp) protein (595aa)
aspartyl-tRNA synthetase; K01876 aspartyl-tRNA synthetase [EC:6.1.1.12] Tax=GWF2_RBX1_38_17_curated
Aspartate--tRNA ligase id=1981664 bin=GWE2_RBX1_39_32 species=Natranaerobius thermophilus genus=Natranaerobius taxon_order=Natranaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
aspartyl-tRNA synthetase
GWF2_RBX1_38_17_gwf2_scaffold_4892_5
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists


comp(5504..6766)
DNA (1263bp) protein (421aa)
histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21] Tax=GWF2_RBX1_38_17_curated
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase id=4250249 bin=GWF2_OP9-related_38_17 species=unknown genus=Halanaerobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
GWF2_RBX1_38_17_gwf2_scaffold_4892_6
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(6789..8105)
DNA (1317bp) protein (439aa)
NtrC family two-component system response regulator id=1981670 bin=GWE2_RBX1_39_32 species=Caldisericum exile genus=Caldisericum taxon_order=Caldisericales taxon_class=Caldisericia phylum=Caldiserica tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
NtrC family two-component system response regulator Tax=GWF2_RBX1_38_17_curated
NtrC family two-component system response regulator
GWF2_RBX1_38_17_gwf2_scaffold_4892_7
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

8759..10093
DNA (1335bp) protein (445aa)
Outer membrane efflux protein id=1981673 bin=GWE2_RBX1_39_32 species=Acetonema longum genus=Acetonema taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
outer membrane efflux protein Tax=GWF2_RBX1_38_17_curated
outer membrane efflux protein
GWF2_RBX1_38_17_gwf2_scaffold_4892_8
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

10197..11255
DNA (1059bp) protein (353aa)
Efflux transporter, RND family, MFP subunit id=1981676 bin=GWE2_RBX1_39_32 species=Desulfovibrio salexigens genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
RND family efflux transporter MFP subunit Tax=GWF2_RBX1_38_17_curated
RND family efflux transporter MFP subunit
GWF2_RBX1_38_17_gwf2_scaffold_4892_9
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

11242..14391
DNA (3150bp) protein (1050aa)
Acriflavin resistance protein id=4250257 bin=GWF2_OP9-related_38_17 species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
acriflavin resistance protein Tax=GWF2_RBX1_38_17_curated
acriflavin resistance protein
GWF2_RBX1_38_17_gwf2_scaffold_4892_10
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(14539..14721)
DNA (183bp) protein (61aa)
id=1981682 Tax=GWF2_RBX1_38_17_curated
id=1981682 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWF2_RBX1_38_17_gwf2_scaffold_4892_11
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(14967..15209)
DNA (243bp) protein (81aa)
id=4250259 bin=GWF2_OP9-related_38_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
id=4250259 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_4892_12
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(15157..15414)
DNA (258bp) protein (86aa)
id=24608141 bin=RAAC11 tax=RAAC11 organism_group=Unknown_CP
id=24608141 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_4892_13
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

15566..16858
DNA (1293bp) protein (431aa)
tig; trigger factor Tig (EC:5.2.1.8) Tax=GWF2_RBX1_38_17_curated
Trigger factor id=1981683 bin=GWE2_RBX1_39_32 species=[Clostridium] stercorarium genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
trigger factor
GWF2_RBX1_38_17_gwf2_scaffold_4892_14
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

16895..17491
DNA (597bp) protein (199aa)
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] Tax=GWF2_RBX1_38_17_curated
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit id=1777281 bin=GWD2_RBX1-related_39_127 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
GWF2_RBX1_38_17_gwf2_scaffold_4892_15
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

17566..18873
DNA (1308bp) protein (436aa)
ATP-dependent Clp protease ATP-binding subunit ClpX id=1777282 bin=GWD2_RBX1-related_39_127 species=unknown genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
ATP-dependent Clp protease ATP-binding subunit clpX Tax=GWF2_RBX1_38_17_curated
ATP-dependent Clp protease ATP-binding subunit ClpX
GWF2_RBX1_38_17_gwf2_scaffold_4892_16
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

18887..21220
DNA (2334bp) protein (778aa)
ATP-dependent protease La (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53] Tax=GWF2_RBX1_38_17_curated
ATP-dependent protease La (EC:3.4.21.53)
Lon protease id=1981687 bin=GWE2_RBX1_39_32 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWF2_RBX1_38_17_gwf2_scaffold_4892_17
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(21212..21325)
DNA (114bp) protein (38aa)
id=24608146 bin=RAAC11 tax=RAAC11 organism_group=Unknown_CP
id=24608146 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_4892_18
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(21357..21518)
DNA (162bp) protein (54aa)
id=24608147 bin=RAAC11 tax=RAAC11 organism_group=Unknown_CP
id=24608147 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_4892_19
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(21544..25089)
DNA (3546bp) protein (1182aa)
pyruvate phosphate dikinase PEP/pyruvate-binding protein; K01007 pyruvate, water dikinase [EC:2.7.9.2] Tax=GWF2_RBX1_38_17_curated
Pyruvate phosphate dikinase PEP/pyruvate-binding protein id=4250391 bin=GWF2_OP9-related_38_17 species=Desulfovibrio desulfuricans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
pyruvate phosphate dikinase PEP/pyruvate-binding protein
GWF2_RBX1_38_17_gwf2_scaffold_4892_trna_1
unknown

Not on your lists

25517..25604
DNA (88bp)
transferRNA
Displaying 20 items

View Taxonomy