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GWF2_RBX1_38_17_gwf2_scaffold_1933

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWF2_RBX1_38_17_gwf2_scaffold_1933_1
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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1..3321
DNA (3321bp) protein (1107aa)
Glycoside hydrolase family 8 id=3660053 bin=GWF2_OP9-related_38_17 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
glycoside hydrolase family protein Tax=GWF2_RBX1_38_17_curated
glycoside hydrolase
GWF2_RBX1_38_17_gwf2_scaffold_1933_2
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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3503..5206
DNA (1704bp) protein (568aa)
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3] Tax=GWF2_RBX1_38_17_curated
Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein id=1978313 bin=GWD2_RBX1-related_39_127 species=Petrotoga mobilis genus=Petrotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
GWF2_RBX1_38_17_gwf2_scaffold_1933_3
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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5268..6119
DNA (852bp) protein (284aa)
pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta (EC:1.2.7.3); K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC:1.2.7.3] Tax=GWF2_RBX1_38_17_curated
pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta (EC:1.2.7.3)
Pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit id=1978314 bin=GWD2_RBX1-related_39_127 species=Methanobacterium sp. genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
GWF2_RBX1_38_17_gwf2_scaffold_1933_4
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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6537..8528
DNA (1992bp) protein (664aa)
4Fe-4S ferredoxin; K03388 heterodisulfide reductase subunit A [EC:1.8.98.1] Tax=GWF2_RBX1_38_17_curated
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein id=3660058 bin=GWF2_OP9-related_38_17 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
4Fe-4S ferredoxin
GWF2_RBX1_38_17_gwf2_scaffold_1933_5
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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8525..8971
DNA (447bp) protein (149aa)
methyl-viologen-reducing hydrogenase delta subunit; K14127 F420-non-reducing hydrogenase iron-sulfur subunit D [EC:1.12.99.-] Tax=GWF2_RBX1_38_17_curated
Methyl-viologen-reducing hydrogenase delta subunit id=3660059 bin=GWF2_OP9-related_38_17 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
methyl-viologen-reducing hydrogenase delta subunit
GWF2_RBX1_38_17_gwf2_scaffold_1933_6
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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8964..9950
DNA (987bp) protein (329aa)
NADH ubiquinone oxidoreductase 20 kDa subunit; K14128 F420-non-reducing hydrogenase subunit G [EC:1.12.99.-] Tax=GWF2_RBX1_38_17_curated
NADH ubiquinone oxidoreductase 20 kDa subunit id=2105469 bin=GWE2_RBX1_39_32 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
NADH ubiquinone oxidoreductase 20 kDa subunit
GWF2_RBX1_38_17_gwf2_scaffold_1933_7
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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9950..11407
DNA (1458bp) protein (486aa)
nickel-dependent hydrogenase large subunit; K14126 F420-non-reducing hydrogenase subunit A [EC:1.12.99.-] Tax=GWF2_RBX1_38_17_curated
Nickel-dependent hydrogenase large subunit id=2105470 bin=GWE2_RBX1_39_32 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
nickel-dependent hydrogenase large subunit
GWF2_RBX1_38_17_gwf2_scaffold_1933_8
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(11458..12573)
DNA (1116bp) protein (372aa)
iron-containing alcohol dehydrogenase id=24609385 bin=RAAC11 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=RAAC11 organism_group=Unknown_CP
iron-containing alcohol dehydrogenase Tax=GWF2_RBX1_38_17_curated
iron-containing alcohol dehydrogenase
GWF2_RBX1_38_17_gwf2_scaffold_1933_9
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(12570..12926)
DNA (357bp) protein (119aa)
Mannose-6-phosphate isomerase id=2105472 bin=GWE2_RBX1_39_32 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
mannose-6-phosphate isomerase Tax=GWF2_RBX1_38_17_curated
mannose-6-phosphate isomerase
GWF2_RBX1_38_17_gwf2_scaffold_1933_10
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(13001..13453)
DNA (453bp) protein (151aa)
hypothetical protein; K09768 hypothetical protein id=24609387 bin=RAAC11 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=RAAC11 organism_group=Unknown_CP
hypothetical protein; K09768 hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWF2_RBX1_38_17_gwf2_scaffold_1933_11
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(13509..14468)
DNA (960bp) protein (320aa)
tRNA-dihydrouridine synthase id=2105474 bin=GWE2_RBX1_39_32 species=Desulfotalea psychrophila genus=Desulfotalea taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWF2_RBX1_38_17_gwf2_scaffold_1933_12
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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14791..15807
DNA (1017bp) protein (339aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=GWF2_RBX1_38_17_curated
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit id=2105475 bin=GWE2_RBX1_39_32 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWF2_RBX1_38_17_gwf2_scaffold_1933_13
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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15833..18247
DNA (2415bp) protein (805aa)
Phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=GWF2_RBX1_38_17_curated
Phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit id=2105476 bin=GWE2_RBX1_39_32 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWF2_RBX1_38_17_gwf2_scaffold_1933_14
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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18258..20729
DNA (2472bp) protein (824aa)
DNA mismatch repair protein MutS id=2105479 bin=GWE2_RBX1_39_32 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS Tax=GWF2_RBX1_38_17_curated
DNA mismatch repair protein MutS
GWF2_RBX1_38_17_gwf2_scaffold_1933_15
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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20770..21822
DNA (1053bp) protein (351aa)
DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7] Tax=GWF2_RBX1_38_17_curated
DNA polymerase III, delta subunit id=2068774 bin=GWE2_RBX1_39_32 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
DNA polymerase III subunit delta
GWF2_RBX1_38_17_gwf2_scaffold_1933_16
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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21870..23003
DNA (1134bp) protein (378aa)
Putative uncharacterized protein id=2068773 bin=GWE2_RBX1_39_32 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
TDP-4-oxo-6-deoxy-D-glucose transaminase; K02805 lipopolysaccharide biosynthesis protein Tax=GWF2_RBX1_38_17_curated
TDP-4-oxo-6-deoxy-D-glucose transaminase
GWF2_RBX1_38_17_gwf2_scaffold_1933_17
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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23015..24169
DNA (1155bp) protein (385aa)
Putative colanic acid biosynthesis glycosyl transferase id=2068772 bin=GWE2_RBX1_39_32 species=Oscillatoria acuminata genus=Oscillatoria taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
glycosyltransferase Tax=GWF2_RBX1_38_17_curated
glycosyltransferase
GWF2_RBX1_38_17_gwf2_scaffold_1933_18
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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24302..25291
DNA (990bp) protein (330aa)
Deacetylase id=2068771 bin=GWE2_RBX1_39_32 species=unknown genus=Fusobacterium taxon_order=Fusobacteriales taxon_class=Fusobacteriia phylum=Fusobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWF2_RBX1_38_17_gwf2_scaffold_1933_19
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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25482..26723
DNA (1242bp) protein (414aa)
Glycosyl transferase, group 1 id=2068769 bin=GWE2_RBX1_39_32 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
group 1 glycosyl transferase Tax=GWF2_RBX1_38_17_curated
group 1 glycosyl transferase
GWF2_RBX1_38_17_gwf2_scaffold_1933_20
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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26801..27838
DNA (1038bp) protein (346aa)
gmd; GDP-mannose 4,6-dehydratase; K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47] Tax=GWF2_RBX1_38_17_curated
GDP-mannose 4,6-dehydratase id=3660153 bin=GWF2_OP9-related_38_17 species=unknown genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
gmd; GDP-mannose 4,6-dehydratase
GWF2_RBX1_38_17_gwf2_scaffold_1933_21
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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27903..28835
DNA (933bp) protein (311aa)
NAD-dependent epimerase/dehydratase; K02377 GDP-L-fucose synthase [EC:1.1.1.271] Tax=GWF2_RBX1_38_17_curated
NAD-dependent epimerase/dehydratase id=3660154 bin=GWF2_OP9-related_38_17 species=Anoxybacillus flavithermus genus=Anoxybacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
rmlD substrate binding domain protein
GWF2_RBX1_38_17_gwf2_scaffold_1933_22
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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28887..29651
DNA (765bp) protein (255aa)
LPS biosynthesis related glycosyltransferase id=24609399 bin=RAAC11 species=Tannerella sp. CAG:118 genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=RAAC11 organism_group=Unknown_CP
LPS biosynthesis related glycosyltransferase Tax=GWF2_RBX1_38_17_curated
LPS biosynthesis glycosyltransferase
Displaying 22 items

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