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gwf2_scaffold_792

Alias: PER_GWF2_33_10_3

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Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_792_1
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

3..5879
DNA (5877bp) protein (1959aa)
Uncharacterized protein (Fragment) n=1 Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7TG05_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KKP40007.1}; Flags: Fragment;; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
hypothetical protein
no description (db=HMMSmart db_id=SM00060 from=1081 to=1174 evalue=0.00034 interpro_id=IPR003961 interpro_description=Fibronectin, type III GO=Molecular Function: protein binding (GO:0005515))
gwf2_scaffold_792_2
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

5966..8122
DNA (2157bp) protein (719aa)
ATP-dependent DNA helicase PcrA; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
ATP-dependent DNA helicase pcrA n=1 Tax=Bacillus smithii 7_3_47FAA RepID=G9QL67_9BACI rbh
ATP-dependent DNA helicase PcrA
coiled-coil (db=Coil db_id=coil from=55 to=76 evalue=NA)
gwf2_scaffold_792_3
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

8227..9276
DNA (1050bp) protein (350aa)
Prepilin-type cleavage/methylation, N-terminal Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=8 to=31 evalue=0.0029 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
gwf2_scaffold_792_4
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(9309..10118)
DNA (810bp) protein (270aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
coiled-coil (db=Coil db_id=coil from=108 to=132 evalue=NA)
seg (db=Seg db_id=seg from=6 to=17)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
gwf2_scaffold_792_5
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(10233..11342)
DNA (1110bp) protein (370aa)
rRNA (Guanine-N(2)-)-methyltransferase n=2 Tax=Thermoanaerobacterium thermosaccharolyticum RepID=D9TQY9_THETC rbh
putative N6-adenine-specific DNA methylase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
putative N6-adenine-specific DNA methylase
UPF0020 (db=PatternScan db_id=PS01261 from=194 to=205 evalue=0.0 interpro_id=IPR000241 interpro_description=Putative RNA methylase)
gwf2_scaffold_792_6
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(11371..11691)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KN90_9ARCH
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
gwf2_scaffold_792_7
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(11784..11885)
DNA (102bp) protein (34aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=15 to=32)
gwf2_scaffold_792_8
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(11966..12376)
DNA (411bp) protein (137aa)
hypothetical protein PpisJ2_02993 n=2 Tax=Pseudoalteromonas RepID=UPI00026CF072
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
(db=HMMPfam db_id=PF09391 from=4 to=135 evalue=2.7e-36 interpro_id=IPR018988 interpro_description=Protein of unknown function DUF2000)
gwf2_scaffold_792_9
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

12831..13241
DNA (411bp) protein (137aa)
id=5094114 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_792_10
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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comp(13243..15723)
DNA (2481bp) protein (827aa)
leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Leucine--tRNA ligase n=1 Tax=Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3) RepID=H2J4F2_MARPK rbh
leucyl-tRNA synthetase
LEUCYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR11946:SF7 from=3 to=826 evalue=0.0)
gwf2_scaffold_792_11
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(15848..17236)
DNA (1389bp) protein (463aa)
glucose-6-phosphate isomerase; K01810 glucose-6-phosphate isomerase [EC:5.3.1.9] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Glucose-6-phosphate isomerase n=2 Tax=Thermosipho africanus RepID=B7IEY3_THEAB rbh
glucose-6-phosphate isomerase
P_GLUCOSE_ISOMERASE_1 (db=PatternScan db_id=PS00765 from=213 to=226 evalue=0.0 interpro_id=IPR018189 interpro_description=Phosphoglucose isomerase, conserved site GO=Molecular Function: glucose-6-phosphate isomerase activity (GO:0004347), Biological Process: gluconeogenesis (GO:0006094), Biological Process: glycolysis (GO:0006096))
gwf2_scaffold_792_12
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

17288..17581
DNA (294bp) protein (98aa)
id=5094117 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_792_13
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

17752..20724
DNA (2973bp) protein (991aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=381 to=398)
gwf2_scaffold_792_14
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(20791..21441)
DNA (651bp) protein (217aa)
transaldolase (EC:2.2.1.2); K00616 transaldolase [EC:2.2.1.2] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Probable transaldolase n=5 Tax=Methanocaldococcus RepID=TAL_METJA
putative transaldolase
TRANSALDOLASE_2 (db=PatternScan db_id=PS00958 from=80 to=97 evalue=0.0 interpro_id=IPR018225 interpro_description=Transaldolase, active site GO=Biological Process: carbohydrate metabolic process (GO:0005975))
gwf2_scaffold_792_15
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

21605..22642
DNA (1038bp) protein (346aa)
id=5094120 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_792_16
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

23014..24381
DNA (1368bp) protein (456aa)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Clostridium ultunense Esp RepID=M1Z682_9CLOT rbh
MiaB family RNA modification protein; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
MiaB family RNA modification protein
MTTASE_RADICAL (db=PatternScan db_id=PS01278 from=155 to=175 evalue=0.0 interpro_id=IPR020612 interpro_description=Methylthiotransferase, conserved site GO=Cellular Component: cellular_component (GO:0005575), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539))
gwf2_scaffold_792_17
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

24348..25088
DNA (741bp) protein (247aa)
Response regulator receiver domain protein n=2 Tax=Clostridiales RepID=J5H0I3_9FIRM
Response regulator (CheY-like protein receiver domain and HTH DNA binding domain) {ECO:0000313|EMBL:KKP40023.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacteri
Two-component system response regulator
seg (db=Seg db_id=seg from=27 to=37)
gwf2_scaffold_792_18
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(25093..25263)
DNA (171bp) protein (57aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
coiled-coil (db=Coil db_id=coil from=29 to=50 evalue=NA)
gwf2_scaffold_792_19
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists


comp(25382..27223)
DNA (1842bp) protein (614aa)
Alanyl-tRNA synthetase, alanyl-tRNA synthetase {ECO:0000313|EMBL:KKP40025.1}; EC=6.1.1.7 {ECO:0000313|EMBL:KKP40025.1};; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria
Alanine--tRNA ligase n=1 Tax=Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy) RepID=F0RSZ5_SPHGB rbh
alanyl-tRNA synthetase
coiled-coil (db=Coil db_id=coil from=357 to=378 evalue=NA)
gwf2_scaffold_792_20
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

27559..27828
DNA (270bp) protein (90aa)
id=5094125 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_792_21
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

27821..28024
DNA (204bp) protein (68aa)
id=5094126 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_792_22
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

28181..28774
DNA (594bp) protein (198aa)
Putative uncharacterized protein n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1RAK1_SPISS
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
seg (db=Seg db_id=seg from=126 to=140)
gwf2_scaffold_792_23
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

28870..30126
DNA (1257bp) protein (419aa)
Phosphoesterase PA-phosphatase related protein n=1 Tax=Frankia sp. CN3 RepID=G6HB13_9ACTO
Phosphoesterase PA-phosphatase-like protein {ECO:0000313|EMBL:KKP40029.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
phosphoesterase PA-phosphatase-like protein
seg (db=Seg db_id=seg from=271 to=284)
gwf2_scaffold_792_24
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

30235..30507
DNA (273bp) protein (91aa)
Uncharacterized conserved protein, yaiN/yohL family n=3 Tax=Clostridium acetobutylicum RepID=Q97D26_CLOAB
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
(db=HMMPfam db_id=PF02583 from=3 to=84 evalue=4.7e-16 interpro_id=IPR003735 interpro_description=Protein of unknown function DUF156)
gwf2_scaffold_792_25
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

30551..31903
DNA (1353bp) protein (451aa)
Heavy metal transport/detoxification protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KJ73_CLOPH
heavy metal transport/detoxification protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
HMA_1 (db=PatternScan db_id=PS01047 from=8 to=37 evalue=0.0 interpro_id=IPR017969 interpro_description=Heavy-metal-associated, conserved site GO=Biological Process: metal ion transport (GO:0030001), Molecular Function: metal ion binding (GO:0046872))
gwf2_scaffold_792_26
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

31924..34269
DNA (2346bp) protein (782aa)
Lead, cadmium, zinc and mercury transporting ATPase / Copper-translocating P-type ATPase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1ATT5_9CLOT rbh
copper-translocating P-type ATPase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
COPPER-TRANSPORTING ATPASE P-TYPE (COPA) (db=HMMPanther db_id=PTHR11939:SF39 from=7 to=755 evalue=0.0)
gwf2_scaffold_792_27
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

34344..40151
DNA (5808bp) protein (1936aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=263 to=273)
gwf2_scaffold_792_28
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

40222..41475
DNA (1254bp) protein (418aa)
Peptidase U32 n=9 Tax=Flavobacteriaceae RepID=E4TC68_RIEAD rbh
Uncharacterized protein {ECO:0000313|EMBL:KKP40034.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
collagenase
PEPTIDASE_U32 (db=PatternScan db_id=PS01276 from=170 to=188 evalue=0.0 interpro_id=IPR001539 interpro_description=Peptidase U32 GO=Biological Process: proteolysis (GO:0006508), Molecular Function: peptidase activity (GO:0008233))
gwf2_scaffold_792_29
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

41525..41770
DNA (246bp) protein (82aa)
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RZ79_LEAB4
4fe-4S ferredoxin iron-sulfur binding domaiN-containing protein; K05337 ferredoxin Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
4fe-4S ferredoxin iron-sulfur binding domain-containing protein
4Fe-4S ferredoxins (db=superfamily db_id=SSF54862 from=3 to=77 evalue=1.2e-09)
gwf2_scaffold_792_30
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(41767..42327)
DNA (561bp) protein (187aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=31 to=49)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
(db=HMMPfam db_id=PF11750 from=5 to=109 evalue=1.3e-20 interpro_id=IPR021737 interpro_description=Bacteriophage phiKZ, Orf197)
Displaying items 1-30 of 89 in total

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