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gwf2_scaffold_1346

Alias: PER_GWF2_33_10_6

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_1346_1
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(1..918)
DNA (918bp) protein (306aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP39550.1}; Flags: Fragment;; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
seg (db=Seg db_id=seg from=14 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
gwf2_scaffold_1346_2
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(1019..2092)
DNA (1074bp) protein (358aa)
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC:5.-.-.-); K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
queA; S-adenosylmethionine:tRNAribosyltransferase-isom erase (Queuosine biosynthesisprotein QueA) (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=2 Tax=Peptoniphilus RepID=E4KZ34_9FIRM rbh
QueA-like (db=superfamily db_id=SSF111337 from=1 to=354 evalue=1.7e-123 interpro_id=IPR003699 interpro_description=Queuosine biosynthesis protein GO=Biological Process: queuosine biosynthetic process (GO:0008616), Molecular Function: transferase activity (GO:0016740), Molecular Function: isomerase activity (GO:0016853))
gwf2_scaffold_1346_3
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(2130..4649)
DNA (2520bp) protein (840aa)
Uncharacterized protein n=2 Tax=cellular organisms RepID=A2U0U4_9FLAO
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
PBS LYASE HEAT-LIKE PROTEIN (db=HMMPanther db_id=PTHR12697 from=592 to=755 evalue=0.0007)
gwf2_scaffold_1346_4
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

4845..5669
DNA (825bp) protein (275aa)
Glycosyl transferase, WecB/TagA/CpsF family n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3A906_CARHZ
WecB/TagA/CpsF family glycosyl transferase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
WecB/TagA/CpsF family glycosyl transferase
(db=HMMPfam db_id=PF03808 from=105 to=258 evalue=1.8e-46 interpro_id=IPR004629 interpro_description=Glycosyl transferase WecB/TagA/CpsF GO=Biological Process: biosynthetic process (GO:0009058))
gwf2_scaffold_1346_5
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

5724..6116
DNA (393bp) protein (131aa)
id=5094270 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_1346_6
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(6157..6663)
DNA (507bp) protein (169aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
coiled-coil (db=Coil db_id=coil from=106 to=127 evalue=NA)
gwf2_scaffold_1346_7
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

6908..8416
DNA (1509bp) protein (503aa)
DNA polymerase III subunits gamma and tau (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
DNA polymerase III subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III, subunits gamma and tau n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CBX8_THET1 rbh
seg (db=Seg db_id=seg from=391 to=404)
gwf2_scaffold_1346_8
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

8450..8968
DNA (519bp) protein (173aa)
Protein of unknown function DUF1696 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=26 to=48)
(db=HMMPfam db_id=PF08000 from=80 to=124 evalue=7.1e-05 interpro_id=IPR012544 interpro_description=Protein of unknown function DUF1696)
gwf2_scaffold_1346_9
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

8983..10011
DNA (1029bp) protein (343aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4); K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4)
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Clostridium sp. L2-50 RepID=A7VB54_9CLOT rbh
no description (db=HMMSmart db_id=SM00382 from=59 to=190 evalue=1.2e-10 interpro_id=IPR003593 interpro_description=ATPase, AAA+ type, core GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: nucleoside-triphosphatase activity (GO:0017111))
gwf2_scaffold_1346_10
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

10033..11274
DNA (1242bp) protein (414aa)
Glutamate/cysteine ligase, glutamate-cysteine ligase {ECO:0000313|EMBL:KKP39559.1}; EC=6.3.2.2 {ECO:0000313|EMBL:KKP39559.1};; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregriniba
gshA; Glutamate--cysteine ligase (EC:6.3.2.2)
glutamate--cysteine ligase n=1 Tax=Diplorickettsia massiliensis 20B RepID=UPI00029A8A1D
gshA_ferroox: glutamate--cysteine ligase (db=HMMTigr db_id=TIGR02049 from=6 to=412 evalue=1.4e-97 interpro_id=IPR011718 interpro_description=Glutamate--cysteine ligase GshA)
gwf2_scaffold_1346_11
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

11338..11784
DNA (447bp) protein (149aa)
Tetratricopeptide TPR_3 n=1 Tax=Chlorobium phaeobacteroides (strain DSM 266) RepID=A1BIB3_CHLPD
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
coiled-coil (db=Coil db_id=coil from=72 to=93 evalue=NA)
gwf2_scaffold_1346_12
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(11795..12574)
DNA (780bp) protein (260aa)
sortase family protein n=2 Tax=Saccharobacteria RepID=UPI00016B20CB
putative sortase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
seg (db=Seg db_id=seg from=132 to=145)
gwf2_scaffold_1346_13
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

12698..14995
DNA (2298bp) protein (766aa)
relA; GTP pyrophosphokinase (EC:2.7.6.5); K00951 GTP pyrophosphokinase [EC:2.7.6.5] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
relA; GTP pyrophosphokinase (EC:2.7.6.5)
GTP pyrophosphokinase n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3A9Z8_CARHZ rbh
seg (db=Seg db_id=seg from=640 to=654)
gwf2_scaffold_1346_14
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(14990..16645)
DNA (1656bp) protein (552aa)
histone acetyltransferase, ELP3 family (EC:2.3.1.48); K07739 elongator complex protein 3 [EC:2.3.1.48] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
histone acetyltransferase, ELP3 family (EC:2.3.1.48)
Histone acetyltransferase n=1 Tax=uncultured Chloroflexi bacterium RepID=H5SER9_9CHLR rbh
(db=HMMPfam db_id=PF00583 from=495 to=538 evalue=0.00013 interpro_id=IPR000182 interpro_description=GCN5-related N-acetyltransferase (GNAT) domain GO=Molecular Function: N-acetyltransferase activity (GO:0008080))
gwf2_scaffold_1346_15
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

16824..17555
DNA (732bp) protein (244aa)
Methyltransferase type 11 n=1 Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L5I3_KORCO
type 11 methyltransferase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
type 11 methyltransferase
METHLYTRANSFERASE, UBIE/COQ5 FAMILY (db=HMMPanther db_id=PTHR10108:SF26 from=48 to=156 evalue=1.8e-14)
gwf2_scaffold_1346_16
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(17602..18372)
DNA (771bp) protein (257aa)
Transcriptional regulator, TrmB n=1 Tax=sediment metagenome RepID=D9PL89_9ZZZZ
transcriptional regulator TrmB Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Transcriptional regulator, TrmB
seg (db=Seg db_id=seg from=125 to=135)
gwf2_scaffold_1346_17
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

18854..20590
DNA (1737bp) protein (579aa)
Uncharacterized protein n=1 Tax=Campylobacter phage CP21 RepID=I7KLS9_9CAUD
Uncharacterized protein {ECO:0000313|EMBL:KKP39566.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
seg (db=Seg db_id=seg from=46 to=58)
gwf2_scaffold_1346_18
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

20757..22496
DNA (1740bp) protein (580aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=103 to=110)
gwf2_scaffold_1346_19
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

22583..24322
DNA (1740bp) protein (580aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=481 to=492)
gwf2_scaffold_1346_20
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

24363..25382
DNA (1020bp) protein (340aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP39569.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
seg (db=Seg db_id=seg from=93 to=106)
(db=HMMPfam db_id=PF00291 from=37 to=335 evalue=1.8e-16 interpro_id=IPR001926 interpro_description=Pyridoxal phosphate-dependent enzyme, beta subunit GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152), Molecular Function: pyridoxal phosphate binding (GO:0030170))
Tryptophan synthase beta subunit-like PLP-dependent enzymes (db=superfamily db_id=SSF53686 from=30 to=336 evalue=6.4e-09 interpro_id=IPR001926 interpro_description=Pyridoxal phosphate-dependent enzyme, beta subunit GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152), Molecular Function: pyridoxal phosphate binding (GO:0030170))
gwf2_scaffold_1346_21
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

25393..27135
DNA (1743bp) protein (581aa)
Putative uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GDE5_9DELT
Putative uncharacterized protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=426 to=439)
gwf2_scaffold_1346_22
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(27162..28895)
DNA (1734bp) protein (578aa)
carboxyl-terminal protease; K03797 carboxyl-terminal processing protease [EC:3.4.21.102] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Carboxyl-terminal protease n=1 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K1Q1_DEHLB
carboxyl-terminal protease
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
gwf2_scaffold_1346_23
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

29024..29821
DNA (798bp) protein (266aa)
PROKAR_LIPOPROTEIN Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=6 to=20)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=22 evalue=6.0)
gwf2_scaffold_1346_24
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(29891..31432)
DNA (1542bp) protein (514aa)
Uncharacterized protein n=1 Tax=Rivularia sp. PCC 7116 RepID=K9R6E6_9CYAN
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
seg (db=Seg db_id=seg from=313 to=329)
gwf2_scaffold_1346_25
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(31663..32439)
DNA (777bp) protein (259aa)
Exodeoxyribonuclease III n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CCM9_DESTA
exodeoxyribonuclease III Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
exodeoxyribonuclease III
AP_NUCLEASE_F1_1 (db=PatternScan db_id=PS00726 from=29 to=38 evalue=0.0 interpro_id=IPR020847 interpro_description=AP endonuclease, family 1, binding site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: endonuclease activity (GO:0004519), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
gwf2_scaffold_1346_26
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

32725..33399
DNA (675bp) protein (225aa)
Transcriptional regulatory protein cutR (Defective melC1 suppressor protein) n=1 Tax=Lysinibacillus sphaericus (strain C3-41) RepID=B1HZW1_LYSSC
cutR; transcriptional regulatory protein cutR Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
two component transcriptional regulator
seg (db=Seg db_id=seg from=194 to=206)
gwf2_scaffold_1346_27
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(33396..33974)
DNA (579bp) protein (193aa)
PROKAR_LIPOPROTEIN Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=23 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=20 evalue=6.0)
gwf2_scaffold_1346_28
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(34120..36276)
DNA (2157bp) protein (719aa)
ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Strongly similar to ATP-dependent DNA helicase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXL3_9BACT rbh
ATP-dependent DNA helicase RecQ
seg (db=Seg db_id=seg from=623 to=634)
gwf2_scaffold_1346_29
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(36344..37483)
DNA (1140bp) protein (380aa)
DEAD/DEAH box helicase, ATP-dependent RNA helicase RhlE {ECO:0000313|EMBL:KKP39578.1}; EC=3.6.4.13 {ECO:0000313|EMBL:KKP39578.1};; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregri
DEAD/DEAH box helicase domain protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HG33_ANADF rbh
ATP-dependent RNA helicase RhlE
DEAD_ATP_HELICASE (db=PatternScan db_id=PS00039 from=149 to=157 evalue=0.0 interpro_id=IPR000629 interpro_description=RNA helicase, ATP-dependent, DEAD-box, conserved site GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: ATP binding (GO:0005524), Molecular Function: ATP-dependent helicase activity (GO:0008026))
gwf2_scaffold_1346_30
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(37750..38277)
DNA (528bp) protein (176aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP39579.1}; Flags: Fragment;; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
seg (db=Seg db_id=seg from=49 to=72)
(db=HMMPfam db_id=PF07705 from=6 to=35 evalue=5.5e-05 interpro_id=IPR011635 interpro_description=APHP)
Displaying 30 items

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