ggKbase home page

gwf2_scaffold_2034

Alias: PER_GWF2_33_10_16

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_2034_1
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

12..1451
DNA (1440bp) protein (480aa)
Uncharacterized protein n=2 Tax=Shewanella baltica RepID=A9L1Y9_SHEB9
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
EGF/Laminin (db=superfamily db_id=SSF57196 from=141 to=200 evalue=0.005)
gwf2_scaffold_2034_2
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

1456..2004
DNA (549bp) protein (183aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=15 to=29)
gwf2_scaffold_2034_3
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

2139..2591
DNA (453bp) protein (151aa)
Uncharacterized protein n=3 Tax=Bacteroides dorei RepID=I8V511_9BACE
Sh3 type 3 domain protein {ECO:0000313|EMBL:KKP38450.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
sh3 type 3 domain-containing protein
seg (db=Seg db_id=seg from=26 to=38)
gwf2_scaffold_2034_4
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(2617..3243)
DNA (627bp) protein (209aa)
id=5094652 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_2034_5
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

3409..3933
DNA (525bp) protein (175aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
seg (db=Seg db_id=seg from=119 to=141)
gwf2_scaffold_2034_6
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

4220..4933
DNA (714bp) protein (238aa)
id=5094654 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_2034_7
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

4942..5136
DNA (195bp) protein (65aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=47 to=54)
gwf2_scaffold_2034_8
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

5177..5692
DNA (516bp) protein (172aa)
AAA family ATPase n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2F147_EMTOG
AAA family ATPase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
AAA family ATPase
gwf2_scaffold_2034_9
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(5848..6060)
DNA (213bp) protein (71aa)
id=5094657 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_2034_10
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(6057..6368)
DNA (312bp) protein (104aa)
Type III restriction enzyme, res subunit n=1 Tax=Prevotella sp. MSX73 RepID=J4V009_9BACT
helicase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
helicase
gwf2_scaffold_2034_11
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(6416..6844)
DNA (429bp) protein (143aa)
id=5094659 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_2034_12
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(7083..8327)
DNA (1245bp) protein (415aa)
CinA-like Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=30 to=41)
(db=HMMPfam db_id=PF02464 from=231 to=355 evalue=5.7e-07 interpro_id=IPR008136 interpro_description=CinA, C-terminal)
CinA-like (db=superfamily db_id=SSF142433 from=210 to=318 evalue=8.0e-06)
gwf2_scaffold_2034_13
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

8457..8972
DNA (516bp) protein (172aa)
id=5094661 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_2034_14
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(8979..9899)
DNA (921bp) protein (307aa)
radical SAM protein; K04070 putative pyruvate formate lyase activating enzyme [EC:1.97.1.4] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Radical SAM domain protein n=12 Tax=Thermoanaerobacter RepID=B0K6V6_THEPX
radical SAM domain-containing protein
RADICAL_ACTIVATING (db=PatternScan db_id=PS01087 from=57 to=78 evalue=0.0 interpro_id=IPR001989 interpro_description=Radical-activating enzyme, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539), Biological Process: oxidation-reduction process (GO:0055114))
gwf2_scaffold_2034_15
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

10018..11838
DNA (1821bp) protein (607aa)
ATP-citrate lyase subunit A, ATP citrate (Pro-S)-lyase {ECO:0000313|EMBL:KKP38462.1}; EC=2.3.3.8 {ECO:0000313|EMBL:KKP38462.1};; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrini
ATP-citrate lyase subunit A n=2 Tax=Methanosaeta harundinacea RepID=G7WP47_METH6 rbh
ATP-citrate lyase subunit A
SUCCINYL_COA_LIG_2 (db=PatternScan db_id=PS00399 from=259 to=275 evalue=0.0 interpro_id=IPR017440 interpro_description=ATP-citrate lyase/succinyl-CoA ligase, active site GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: ATP citrate synthase activity (GO:0003878), Molecular Function: succinate-CoA ligase (ADP-forming) activity (GO:0004775), Biological Process: metabolic process (GO:0008152))
gwf2_scaffold_2034_16
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

11936..12352
DNA (417bp) protein (139aa)
Putative peptide chain release factor 1 n=1 Tax=Simkania negevensis (strain ATCC VR-1471 / Z) RepID=F8L815_SIMNZ
prfA3; putative peptide chain release factor 1 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
prfA3; putative peptide chain release factor 1
seg (db=Seg db_id=seg from=87 to=116)
gwf2_scaffold_2034_17
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(12407..14623)
DNA (2217bp) protein (739aa)
NAD-dependent isocitrate dehydrogenase; K00031 isocitrate dehydrogenase [EC:1.1.1.42] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Isocitrate dehydrogenase, NADP-dependent n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QVP5_CHLT3 rbh
NAD-dependent isocitrate dehydrogenase
monomer_idh: isocitrate dehydrogenase, NA (db=HMMTigr db_id=TIGR00178 from=1 to=736 evalue=0.0 interpro_id=IPR004436 interpro_description=Isocitrate dehydrogenase NADP-dependent, monomeric GO=Molecular Function: isocitrate dehydrogenase (NADP+) activity (GO:0004450), Biological Process: tricarboxylic acid cycle (GO:0006099), Biological Process: oxidation-reduction process (GO:0055114))
gwf2_scaffold_2034_18
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists


comp(14633..16414)
DNA (1782bp) protein (594aa)
Aspartyl-tRNA synthetase, aspartyl-tRNA synthetase {ECO:0000313|EMBL:KKP38465.1}; EC=6.1.1.12 {ECO:0000313|EMBL:KKP38465.1};; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibac
Aspartate--tRNA ligase n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=SYD_SYNWW rbh
aspartyl-tRNA synthetase
coiled-coil (db=Coil db_id=coil from=120 to=141 evalue=NA)
gwf2_scaffold_2034_19
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(16743..20096)
DNA (3354bp) protein (1118aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
coiled-coil (db=Coil db_id=coil from=751 to=772 evalue=NA)
seg (db=Seg db_id=seg from=77 to=89)
gwf2_scaffold_2034_20
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(20113..21219)
DNA (1107bp) protein (369aa)
id=5094668 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_2034_21
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

21377..22453
DNA (1077bp) protein (359aa)
mannose-1-phosphate guanylyltransferase (EC:2.7.7.22 2.7.7.13 5.3.1.8) Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
mannose-1-phosphate guanylyltransferase (EC:2.7.7.22 2.7.7.13 5.3.1.8)
Mannose-1-phosphate guanylyltransferase (GDP) n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8D179_HALOH
seg (db=Seg db_id=seg from=121 to=133)
gwf2_scaffold_2034_22
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

22495..24075
DNA (1581bp) protein (527aa)
Proposed peptidoglycan lipid II flippase MurJ n=1 Tax=Caloramator australicus RC3 RepID=I7LHS1_9CLOT rbh
mviN1; integral membrane protein MviN; K03980 virulence factor Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
mviN1; integral membrane protein MviN
transmembrane_regions (db=TMHMM db_id=tmhmm from=6 to=25)
gwf2_scaffold_2034_23
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(24086..25207)
DNA (1122bp) protein (374aa)
Riboflavin biosynthesis protein RibD n=1 Tax=Clostridium tetani (strain Massachusetts / E88) RepID=Q897R0_CLOTE rbh
Riboflavin biosynthesis protein RibD {ECO:0000313|EMBL:KKP38470.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
riboflavin biosynthesis protein
CYT_DCMP_DEAMINASES (db=PatternScan db_id=PS00903 from=58 to=96 evalue=0.0 interpro_id=IPR016192 interpro_description=APOBEC/CMP deaminase, zinc-binding GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity (GO:0016787))
gwf2_scaffold_2034_24
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(25277..26095)
DNA (819bp) protein (273aa)
id=5094672 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_2034_25
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

26361..27326
DNA (966bp) protein (322aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP38472.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
coiled-coil (db=Coil db_id=coil from=241 to=262 evalue=NA)
seg (db=Seg db_id=seg from=65 to=77)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=8 to=64 evalue=1.4e-08)
gwf2_scaffold_2034_26
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(27323..28522)
DNA (1200bp) protein (400aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase, 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II {ECO:0000313|EMBL:KKP38473.1}; EC=3.5.4.25 {ECO:0000313|EMBL:KKP38473.1};; EC=4.1.9
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:3.5.4.25)
Riboflavin biosynthesis protein RibBA n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8CWT8_HALOH rbh
seg (db=Seg db_id=seg from=379 to=391)
Displaying 26 items

View Taxonomy