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gwf2_scaffold_6668

Alias: PER_GWF2_33_10_38

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_6668_1
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

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1..159
DNA (159bp) protein (53aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP36762.1}; Flags: Fragment;; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
(db=HMMPfam db_id=PF00412 from=21 to=49 evalue=0.0002 interpro_id=IPR001781 interpro_description=Zinc finger, LIM-type GO=Molecular Function: zinc ion binding (GO:0008270))
gwf2_scaffold_6668_2
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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177..944
DNA (768bp) protein (256aa)
lipoate--protein ligase; K03800 lipoate-protein ligase A [EC:2.7.7.63] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Lipoate-protein ligase A n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VUW6_9EURY
lipoate--protein ligase
LIPOATE-PROTEIN LIGASE (db=HMMPanther db_id=PTHR12561 from=7 to=255 evalue=1.2e-34)
gwf2_scaffold_6668_3
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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988..2079
DNA (1092bp) protein (364aa)
gcvT; glycine cleavage system aminomethyltransferase T; K00605 aminomethyltransferase [EC:2.1.2.10] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Aminomethyltransferase n=1 Tax=Geobacillus sp. (strain WCH70) RepID=GCST_GEOSW rbh
gcvT; glycine cleavage system aminomethyltransferase T
AMINOMETHYLTRANSFERASE (db=HMMPanther db_id=PTHR13847:SF5 from=2 to=345 evalue=1.5e-142 interpro_id=IPR006223 interpro_description=Glycine cleavage system T protein GO=Molecular Function: aminomethyltransferase activity (GO:0004047), Biological Process: glycine catabolic process (GO:0006546))
gwf2_scaffold_6668_4
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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2169..2567
DNA (399bp) protein (133aa)
Glycine cleavage system H protein n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=GCSH_SYMTH
glycine cleavage system protein H; K02437 glycine cleavage system H protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gcvH; glycine cleavage system H protein
LIPOYL (db=PatternScan db_id=PS00189 from=50 to=79 evalue=0.0 interpro_id=IPR003016 interpro_description=2-oxo acid dehydrogenase, lipoyl-binding site)
gwf2_scaffold_6668_5
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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2592..3914
DNA (1323bp) protein (441aa)
glycine dehydrogenase (decarboxylating) subunit 1 (EC:1.4.4.2) Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Probable glycine dehydrogenase [decarboxylating] subunit 1 n=1 Tax=Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC) RepID=D8GLB5_CLOLD rbh
Glycine dehydrogenase (decarboxylating)
coiled-coil (db=Coil db_id=coil from=48 to=69 evalue=NA)
gwf2_scaffold_6668_6
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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3973..5403
DNA (1431bp) protein (477aa)
glycine dehydrogenase subunit 2 (EC:1.4.4.2); K00283 glycine dehydrogenase subunit 2 [EC:1.4.4.2] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gcvPB; putative glycine dehydrogenase [decarboxylating] subunit 2 (EC:1.4.4.2)
Probable glycine dehydrogenase [decarboxylating] subunit 2 n=20 Tax=Staphylococcus RepID=GCSPB_STAHJ rbh
seg (db=Seg db_id=seg from=268 to=278)
gwf2_scaffold_6668_7
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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5443..6255
DNA (813bp) protein (271aa)
Biotin synthetase-like uncharacterized protein n=1 Tax=Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3) RepID=H2J6W1_MARPK
biotin synthetase-like protein; K09711 hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
biotin synthetase-like protein
seg (db=Seg db_id=seg from=92 to=104)
gwf2_scaffold_6668_8
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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6326..7300
DNA (975bp) protein (325aa)
biotin synthase-related enzyme; K01012 biotin synthetase [EC:2.8.1.6] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Biotin synthase-related enzyme n=1 Tax=Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3) RepID=H2J595_MARPK
biotin synthase-related enzyme
seg (db=Seg db_id=seg from=48 to=64)
gwf2_scaffold_6668_9
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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7310..8668
DNA (1359bp) protein (453aa)
acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_
acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase n=15 Tax=Clostridium RepID=A5I2A4_CLOBH rbh
PYRIDINE_REDOX_1 (db=PatternScan db_id=PS00076 from=38 to=48 evalue=0.0 interpro_id=IPR012999 interpro_description=Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO=Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, NAD or NADP as acceptor (GO:0016668), Biological Process: oxidation-reduction process (GO:0055114))
gwf2_scaffold_6668_10
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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comp(8682..11291)
DNA (2610bp) protein (870aa)
DNA mismatch repair protein MutS n=1 Tax=Clostridium sp. ASF356 RepID=N1ZKR1_9CLOT rbh
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
DNA mismatch repair protein MutS
DNA_MISMATCH_REPAIR_2 (db=PatternScan db_id=PS00486 from=690 to=706 evalue=0.0 interpro_id=IPR000432 interpro_description=DNA mismatch repair protein MutS, C-terminal GO=Molecular Function: ATP binding (GO:0005524), Biological Process: mismatch repair (GO:0006298), Molecular Function: mismatched DNA binding (GO:0030983))
gwf2_scaffold_6668_11
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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11739..12314
DNA (576bp) protein (192aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
gwf2_scaffold_6668_12
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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12437..13582
DNA (1146bp) protein (382aa)
L,D-transpeptidase catalytic domain Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
L,D-transpeptidase catalytic domain-like (db=superfamily db_id=SSF141523 from=243 to=381 evalue=5.3e-19)
(db=HMMPfam db_id=PF03734 from=247 to=378 evalue=6.7e-09 interpro_id=IPR005490 interpro_description=L,D-transpeptidase catalytic domain GO=Molecular Function: transferase activity (GO:0016740))
gwf2_scaffold_6668_13
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

13606..14076
DNA (471bp) protein (157aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP36774.1}; Flags: Fragment;; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
seg (db=Seg db_id=seg from=127 to=142)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
Displaying 13 items

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