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gwf2_scaffold_207

Alias: PER_GWF2_39_17_4

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Displaying items 1-30 of 106 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_207_1
PER_GWF2_39_17, Peregrinibacteria, Bacteria

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2..826
DNA (825bp) protein (275aa)
seg Tax=PER_GWF2_39_17
seg (db=Seg db_id=seg from=116 to=127)
gwf2_scaffold_207_2
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

892..3462
DNA (2571bp) protein (857aa)
Regulator of chromosome condensation n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CMD0_MYXFH
regulator of chromosome condensation Tax=PER_GWF2_39_17
regulator of chromosome condensation
seg (db=Seg db_id=seg from=377 to=393)
gwf2_scaffold_207_3
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

3633..4088
DNA (456bp) protein (152aa)
transmembrane_regions Tax=PER_GWF2_39_17
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=23)
seg (db=Seg db_id=seg from=4 to=19)
gwf2_scaffold_207_4
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

4175..6256
DNA (2082bp) protein (694aa)
adenylate cyclase (EC:4.6.1.1); K01768 adenylate cyclase [EC:4.6.1.1] Tax=PER_GWF2_39_17
adenylate cyclase (EC:4.6.1.1)
Adenylate/guanylate cyclase with Chase sensor n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XUF7_9BACT rbh
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
gwf2_scaffold_207_5
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

6430..7731
DNA (1302bp) protein (434aa)
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13] Tax=PER_GWF2_39_17
DEAD/DEAH box helicase domain protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HG33_ANADF rbh
ATP-dependent RNA helicase RhlE
DEAD_ATP_HELICASE (db=PatternScan db_id=PS00039 from=164 to=172 evalue=0.0 interpro_id=IPR000629 interpro_description=RNA helicase, ATP-dependent, DEAD-box, conserved site GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: ATP binding (GO:0005524), Molecular Function: ATP-dependent helicase activity (GO:0008026))
gwf2_scaffold_207_6
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(7792..9198)
DNA (1407bp) protein (469aa)
DNA methylase-type I restriction-modification system n=3 Tax=Pasteurella haemolytica RepID=M4XQS4_PASHA
DNA methylase-type I restriction-modification system Tax=PER_GWF2_39_17
DNA methylase-type I restriction-modification system
seg (db=Seg db_id=seg from=408 to=423)
gwf2_scaffold_207_7
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

comp(9201..10199)
DNA (999bp) protein (333aa)
Probable Death-on-curing family protein n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DAE9_9PROT
Death-on-curing family protein {ECO:0000313|EMBL:KKR26121.1}; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWE2_39_6.;"
death-on-curing family protein
coiled-coil (db=Coil db_id=coil from=130 to=151 evalue=NA)
gwf2_scaffold_207_8
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

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comp(10202..12244)
DNA (2043bp) protein (681aa)
N-6 DNA methylase n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E672_METEZ rbh
N-6 DNA methylase {ECO:0000313|EMBL:KKR26120.1}; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWE2_39_6.;"
N-6 DNA methylase
seg (db=Seg db_id=seg from=311 to=323)
gwf2_scaffold_207_9
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

comp(12275..13675)
DNA (1401bp) protein (467aa)
Inner membrane protein involved in colicin E2 resistance n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KXV5_SOLCM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKR26119.1}; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWE2_39_6.;"
Inner membrane protein involved in colicin E2 resistance
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=38)
gwf2_scaffold_207_10
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

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14047..14370
DNA (324bp) protein (108aa)
Translation initiation factor IF-1 n=4 Tax=Halanaerobiaceae RepID=B8D0T2_HALOH
Translation initiation factor IF-1, translation initiation factor IF-1 {ECO:0000313|EMBL:KKR26118.1}; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_G
translation initiation factor IF-1
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=1 to=75 evalue=1.3e-20 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
gwf2_scaffold_207_11
PER_GWF2_39_17, Peregrinibacteria, Bacteria

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14539..14922
DNA (384bp) protein (128aa)
30S ribosomal protein S13 n=2 Tax=Lactobacillus versmoldensis KCTC 3814 RepID=UPI00024915C9
30S ribosomal protein S13, small subunit ribosomal protein S13 {ECO:0000313|EMBL:KKR08775.1}; TaxID=1619067 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_39_1
rpsM; 30S ribosomal protein S13
30S RIBOSOMAL PROTEIN S13 (db=HMMPanther db_id=PTHR10871:SF1 from=1 to=123 evalue=1.1e-44)
gwf2_scaffold_207_12
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists


14960..15364
DNA (405bp) protein (135aa)
30S ribosomal protein S11 n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CFF2_THET1
30S ribosomal protein S11, small subunit ribosomal protein S11 {ECO:0000313|EMBL:KKR08776.1}; TaxID=1619067 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_39_1
30S ribosomal protein S11
RIBOSOMAL_S11 (db=PatternScan db_id=PS00054 from=102 to=124 evalue=0.0 interpro_id=IPR018102 interpro_description=Ribosomal S11, conserved site)
gwf2_scaffold_207_13
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists


15420..16040
DNA (621bp) protein (207aa)
30S ribosomal protein S4 n=1 Tax=Cloacamonas acidaminovorans (strain Evry) RepID=B0VI05_CLOAI
30S ribosomal protein S4, small subunit ribosomal protein S4 {ECO:0000313|EMBL:KKR26115.1}; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWE2_39_6.;
30S ribosomal protein S4
RIBOSOMAL_S4 (db=PatternScan db_id=PS00632 from=93 to=117 evalue=0.0 interpro_id=IPR018079 interpro_description=Ribosomal protein S4, conserved site GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843))
gwf2_scaffold_207_14
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

16069..17064
DNA (996bp) protein (332aa)
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=PER_GWF2_39_17
DNA-directed RNA polymerase subunit alpha n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=RPOA_HERA2
DNA-directed RNA polymerase subunit alpha
Insert subdomain of RNA polymerase alpha subunit (db=superfamily db_id=SSF56553 from=52 to=172 evalue=1.9e-41 interpro_id=IPR011262 interpro_description=DNA-directed RNA polymerase, insert domain GO=Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351), Molecular Function: protein dimerization activity (GO:0046983))
gwf2_scaffold_207_15
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists


17094..17465
DNA (372bp) protein (124aa)
50S ribosomal protein L17 n=1 Tax=Petrotoga mobilis (strain DSM 10674 / SJ95) RepID=RL17_PETMO
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=PER_GWF2_39_17
rplQ; 50S ribosomal protein L17
RIBOSOMAL_L17 (db=PatternScan db_id=PS01167 from=34 to=56 evalue=0.0 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwf2_scaffold_207_16
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists


17497..17937
DNA (441bp) protein (147aa)
50S ribosomal protein L13 n=1 Tax=Hippea maritima (strain ATCC 700847 / DSM 10411 / MH2) RepID=F2LXJ9_HIPMA
50S ribosomal protein L13, large subunit ribosomal protein L13 {ECO:0000313|EMBL:KKR08780.1}; TaxID=1619067 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_39_1
50S ribosomal protein L13
(db=HMMPfam db_id=PF00572 from=18 to=144 evalue=1.0e-48 interpro_id=IPR005822 interpro_description=Ribosomal protein L13 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwf2_scaffold_207_17
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists


17967..18422
DNA (456bp) protein (152aa)
30S ribosomal protein S9 n=4 Tax=Geobacillus RepID=RS9_GEOSW
30S ribosomal protein S9, small subunit ribosomal protein S9 {ECO:0000313|EMBL:KKR08781.1}; TaxID=1619067 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_39_17.
30S ribosomal protein S9
RIBOSOMAL_S9 (db=PatternScan db_id=PS00360 from=90 to=108 evalue=0.0 interpro_id=IPR020574 interpro_description=Ribosomal protein S9, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwf2_scaffold_207_18
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(18535..19353)
DNA (819bp) protein (273aa)
Tax=PER_GWF2_39_17
gwf2_scaffold_207_19
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(19436..19867)
DNA (432bp) protein (144aa)
Tax=PER_GWF2_39_17
gwf2_scaffold_207_20
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

19931..20602
DNA (672bp) protein (224aa)
tRNA (Guanine-N1)-methyltransferase, tRNA (Guanine37-N1)-methyltransferase {ECO:0000313|EMBL:KKR26108.1}; EC=2.1.1.228 {ECO:0000313|EMBL:KKR26108.1};; TaxID=1619064 species="Bacteria; Peregrinibacteri
UPI0002894B46 related cluster n=1 Tax=unknown RepID=UPI0002894B46
tRNA (guanine-N1)-methyltransferase
trmD: tRNA (guanine-N1)-methyltransferase (db=HMMTigr db_id=TIGR00088 from=1 to=218 evalue=2.8e-103 interpro_id=IPR002649 interpro_description=tRNA (guanine-N1-)-methyltransferase, bacteria GO=Molecular Function: RNA binding (GO:0003723), Biological Process: tRNA processing (GO:0008033), Molecular Function: tRNA (guanine-N1-)-methyltransferase activity (GO:0009019))
gwf2_scaffold_207_21
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

20630..23251
DNA (2622bp) protein (874aa)
pacL; cation-transporting ATPase A (EC:3.6.3.-); K01537 Ca2+-transporting ATPase [EC:3.6.3.8] Tax=PER_GWF2_39_17
pacL; cation-transporting ATPase A (EC:3.6.3.-)
Cation-transporting ATPase, E1-E2 family n=146 Tax=Bacillus RepID=C3L657_BACAC rbh
transmembrane_regions (db=TMHMM db_id=tmhmm from=49 to=71)
gwf2_scaffold_207_22
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

23310..23552
DNA (243bp) protein (81aa)
UPF0235 protein Lepil_0373 n=1 Tax=Leptonema illini DSM 21528 RepID=H2CKM5_9LEPT
Uncharacterized protein {ECO:0000313|EMBL:KKR08786.1}; TaxID=1619067 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_39_17.;"
hypothetical protein
YggU-like (db=superfamily db_id=SSF69786 from=10 to=80 evalue=1.5e-15 interpro_id=IPR003746 interpro_description=Protein of unknown function DUF167)
gwf2_scaffold_207_23
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists


23577..24362
DNA (786bp) protein (262aa)
ksgA; dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N079_ANATU
dimethyladenosine transferase Tax=PER_GWF2_39_17
(db=HMMPfam db_id=PF00416 from=210 to=260 evalue=0.00011 interpro_id=IPR001892 interpro_description=Ribosomal protein S13 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwf2_scaffold_207_24
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(24457..25449)
DNA (993bp) protein (331aa)
orotidine 5'-phosphate decarboxylase (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] Tax=PER_GWF2_39_17
Orotidine 5'-phosphate decarboxylase n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0K798_HALHC rbh
orotidine 5''-phosphate decarboxylase, subfamily 2
OMPDECASE (db=PatternScan db_id=PS00156 from=116 to=129 evalue=0.0 interpro_id=IPR018089 interpro_description=Orotidine 5'-phosphate decarboxylase, active site GO=Molecular Function: orotidine-5'-phosphate decarboxylase activity (GO:0004590), Biological Process: 'de novo' pyrimidine base biosynthetic process (GO:0006207))
gwf2_scaffold_207_25
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(25556..26236)
DNA (681bp) protein (227aa)
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10); K00762 orotate phosphoribosyltransferase [EC:2.4.2.10] Tax=PER_GWF2_39_17
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DLE6_9BACT
pyrE: orotate phosphoribosyltransferase (db=HMMTigr db_id=TIGR00336 from=12 to=194 evalue=1.3e-54 interpro_id=IPR004467 interpro_description=Orotate phosphoribosyl transferase, clade 1 GO=Molecular Function: orotate phosphoribosyltransferase activity (GO:0004588), Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221))
gwf2_scaffold_207_26
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(26270..27115)
DNA (846bp) protein (282aa)
Probable dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=4 Tax=Methanocaldococcus RepID=PYRK_METJA
dihydroorotate dehydrogenase electron transfer subunit; K02823 dihydroorotate dehydrogenase electron transfer subunit Tax=PER_GWF2_39_17
dihydroorotate dehydrogenase electron transfer subunit
DIHYDROOROTATE DEHYDROGENASE (db=HMMPanther db_id=PTHR11938:SF7 from=47 to=178 evalue=1.3e-21)
gwf2_scaffold_207_27
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

comp(27137..28075)
DNA (939bp) protein (313aa)
Dihydroorotate dehydrogenase family protein, dihydroorotate dehydrogenase (Fumarate) {ECO:0000313|EMBL:KKR24581.1}; EC=1.3.98.1 {ECO:0000313|EMBL:KKR24581.1};; TaxID=1619064 species="Bacteria; Peregri
dihydroorotate dehydrogenase fumarate (EC:1.3.98.1)
Dihydroorotate dehydrogenase n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XQB6_9BACT
DHODEHASE_2 (db=PatternScan db_id=PS00912 from=247 to=267 evalue=0.0 interpro_id=IPR001295 interpro_description=Dihydroorotate dehydrogenase, conserved site GO=Molecular Function: dihydroorotate dehydrogenase activity (GO:0004152), Biological Process: 'de novo' pyrimidine base biosynthetic process (GO:0006207), Biological Process: oxidation-reduction process (GO:0055114))
gwf2_scaffold_207_28
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(28285..29661)
DNA (1377bp) protein (459aa)
dihydroorotase, multifunctional complex type; K01465 dihydroorotase [EC:3.5.2.3] Tax=PER_GWF2_39_17
Dihydroorotase, multifunctional complex type n=4 Tax=root RepID=B5EQR8_ACIF5 rbh
dihydroorotase, multifunctional complex type
DIHYDROOROTASE_1 (db=PatternScan db_id=PS00482 from=58 to=66 evalue=0.0 interpro_id=IPR002195 interpro_description=Dihydroorotase, conserved site GO=Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides (GO:0016812))
gwf2_scaffold_207_29
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

29910..30122
DNA (213bp) protein (71aa)
Tax=PER_GWF2_39_17
gwf2_scaffold_207_30
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

30161..30433
DNA (273bp) protein (91aa)
Tax=PER_GWF2_39_17
Displaying items 1-30 of 106 in total

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