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gwf2_scaffold_2030

Alias: PER_GWF2_43_18_10

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_2030_1
PER_GWF2_43_17, Peregrinibacteria, Bacteria

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comp(71..364)
-----------------
DNA (294bp)
protein (98aa)
seg Tax=PER_GWF2_43_17
seg (db=Seg db_id=seg from=15 to=29)
gwf2_scaffold_2030_2
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(364..2178)
-----------------
DNA (1815bp)
protein (605aa)
guaA; GMP synthase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] Tax=PER_GWF2_43_17
guaA; GMP synthase glutamine-hydrolysing (EC:6.3.5.2)
Bifunctional GMP synthase/glutamine amidotransferase protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DKP8_9BACT rbh
seg (db=Seg db_id=seg from=28 to=41)
gwf2_scaffold_2030_3
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(2188..2442)
-----------------
DNA (255bp)
protein (85aa)
Tax=PER_GWF2_43_17
gwf2_scaffold_2030_4
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

2524..2748
-----------------
DNA (225bp)
protein (75aa)
Tax=PER_GWF2_43_17
gwf2_scaffold_2030_5
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(2663..4288)
-----------------
DNA (1626bp)
protein (542aa)
seg Tax=PER_GWF2_43_17
seg (db=Seg db_id=seg from=4 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
gwf2_scaffold_2030_6
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

4402..6264
-----------------
DNA (1863bp)
protein (621aa)
seg Tax=PER_GWF2_43_17
seg (db=Seg db_id=seg from=248 to=266)
gwf2_scaffold_2030_7
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(6287..8965)
-----------------
DNA (2679bp)
protein (893aa)
seg Tax=PER_GWF2_43_17
seg (db=Seg db_id=seg from=580 to=592)
coiled-coil (db=Coil db_id=coil from=156 to=181 evalue=NA)
gwf2_scaffold_2030_8
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(9044..10612)
-----------------
DNA (1569bp)
protein (523aa)
lysyl-tRNA synthetase; K04566 lysyl-tRNA synthetase, class I [EC:6.1.1.6] Tax=PER_GWF2_43_17
lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Pseudanabaena biceps PCC 7429 RepID=L8MR07_9CYAN rbh
seg (db=Seg db_id=seg from=177 to=193)
gwf2_scaffold_2030_9
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(10721..12166)
-----------------
DNA (1446bp)
protein (482aa)
Replicative DNA helicase, replicative DNA helicase {ECO:0000313|EMBL:KKT01664.1}; EC=3.6.4.12 {ECO:0000313|EMBL:KKT01664.1};; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" source="Peregrinibac
Replicative DNA helicase n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0KBT9_HALHC rbh
replicative DNA helicase
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=208 to=461 evalue=1.0e-56)
gwf2_scaffold_2030_10
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

12221..12541
-----------------
DNA (321bp)
protein (107aa)
UPF0102 protein Adeg_1406 n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R878_AMMDK
hypothetical protein; K07460 putative endonuclease Tax=PER_GWF2_43_17
hypothetical protein
(db=HMMPfam db_id=PF02021 from=5 to=95 evalue=1.4e-23 interpro_id=IPR003509 interpro_description=Uncharacterised protein family UPF0102)
gwf2_scaffold_2030_11
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

12553..13497
-----------------
DNA (945bp)
protein (315aa)
transmembrane_regions Tax=PER_GWF2_43_17
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
gwf2_scaffold_2030_12
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(13528..13653)
-----------------
DNA (126bp)
protein (42aa)
Tax=PER_GWF2_43_17
gwf2_scaffold_2030_13
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

13890..15386
-----------------
DNA (1497bp)
protein (499aa)
Mg chelatase, subunit ChlI n=1 Tax=Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) RepID=E8T4P4_THEA1 rbh
Mg chelatase, subunit ChlI; K07391 magnesium chelatase family protein Tax=PER_GWF2_43_17
Mg chelatase, subunit ChlI
no description (db=HMMSmart db_id=SM00382 from=208 to=390 evalue=0.00069 interpro_id=IPR003593 interpro_description=ATPase, AAA+ type, core GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: nucleoside-triphosphatase activity (GO:0017111))
gwf2_scaffold_2030_14
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

15427..15660
-----------------
DNA (234bp)
protein (78aa)
Tax=PER_GWF2_43_17
gwf2_scaffold_2030_15
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

15657..16025
-----------------
DNA (369bp)
protein (123aa)
Toxin-antitoxin system, toxin component, RelE family n=1 Tax=delta proteobacterium NaphS2 RepID=D8F4X1_9DELT
cytotoxic translational repressor of toxin-antitoxin stability system Tax=PER_GWF2_43_17
addiction module antitoxin RelB
RelE_StbE: addiction module toxin, RelE/Stb (db=HMMTigr db_id=TIGR02385 from=4 to=84 evalue=0.00012 interpro_id=IPR012753 interpro_description=Addiction module toxin, RelE/StbE)
gwf2_scaffold_2030_16
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(16054..16281)
-----------------
DNA (228bp)
protein (76aa)
Tax=PER_GWF2_43_17
gwf2_scaffold_2030_17
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(16361..17869)
-----------------
DNA (1509bp)
protein (503aa)
seg Tax=PER_GWF2_43_17
seg (db=Seg db_id=seg from=298 to=307)
no description (db=Gene3D db_id=G3DSA:3.30.565.10 from=232 to=419 evalue=4.9e-05 interpro_id=IPR003594 interpro_description=ATPase-like, ATP-binding domain GO=Molecular Function: ATP binding (GO:0005524))
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (db=superfamily db_id=SSF55874 from=235 to=418 evalue=6.9e-11 interpro_id=IPR003594 interpro_description=ATPase-like, ATP-binding domain GO=Molecular Function: ATP binding (GO:0005524))
gwf2_scaffold_2030_18
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

17939..21172
-----------------
DNA (3234bp)
protein (1078aa)
carbamoyl-phosphate synthase, large subunit (EC:6.3.4.16); K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] Tax=PER_GWF2_43_17
carB; carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase, large subunit n=1 Tax=Odoribacter laneus YIT 12061 RepID=H1DJ58_9PORP rbh
seg (db=Seg db_id=seg from=307 to=319)
gwf2_scaffold_2030_19
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

21380..21643
-----------------
DNA (264bp)
protein (88aa)
Transcription regulator TrmB, N-terminal Tax=PER_GWF2_43_17
(db=HMMPfam db_id=PF01978 from=7 to=68 evalue=1.2e-05 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
gwf2_scaffold_2030_20
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

21669..22547
-----------------
DNA (879bp)
protein (293aa)
Pyridoxal biosynthesis lyase pdxS; K06215 pyridoxine biosynthesis protein [EC:4.-.-.-] Tax=PER_GWF2_43_17
Pyridoxal biosynthesis lyase PdxS n=2 Tax=Odoribacter RepID=F9Z8U2_ODOSD rbh
Pyridoxal biosynthesis lyase pdxS
seg (db=Seg db_id=seg from=211 to=222)
gwf2_scaffold_2030_21
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

22780..23349
-----------------
DNA (570bp)
protein (190aa)
glutamine amidotransferase subunit PdxT; K08681 glutamine amidotransferase [EC:2.6.-.-] Tax=PER_GWF2_43_17
Glutamine amidotransferase subunit PdxT n=1 Tax=Thermotoga thermarum DSM 5069 RepID=F7YWA1_9THEM
glutamine amidotransferase
PDXT_SNO_1 (db=PatternScan db_id=PS01236 from=40 to=50 evalue=0.0 interpro_id=IPR021196 interpro_description=PdxT/SNO family, conserved site)
gwf2_scaffold_2030_22
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

23346..23936
-----------------
DNA (591bp)
protein (197aa)
folE; GTP cyclohydrolase I; K01495 GTP cyclohydrolase I [EC:3.5.4.16] Tax=PER_GWF2_43_17
GTP cyclohydrolase 1 n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AJ92_IGNAJ
folE; GTP cyclohydrolase I
GTP_CYCLOHYDROL_1_1 (db=PatternScan db_id=PS00859 from=74 to=90 evalue=0.0 interpro_id=IPR018234 interpro_description=GTP cyclohydrolase I, conserved site GO=Molecular Function: GTP cyclohydrolase I activity (GO:0003934), Cellular Component: cytoplasm (GO:0005737), Biological Process: tetrahydrofolate biosynthetic process (GO:0046654))
gwf2_scaffold_2030_23
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

23951..24553
-----------------
DNA (603bp)
protein (201aa)
Recombination protein RecR n=4 Tax=Paenibacillus RepID=E3EGB2_PAEPS
recR; recombination protein recR; K06187 recombination protein RecR Tax=PER_GWF2_43_17
recombination protein recr
RECR (db=PatternScan db_id=PS01300 from=59 to=80 evalue=0.0 interpro_id=IPR015967 interpro_description=Recombination protein RecR, conserved site GO=Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
gwf2_scaffold_2030_24
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(24550..24888)
-----------------
DNA (339bp)
protein (113aa)
Tax=PER_GWF2_43_17
gwf2_scaffold_2030_25
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(24901..25872)
-----------------
DNA (972bp)
protein (324aa)
seg Tax=PER_GWF2_43_17
seg (db=Seg db_id=seg from=31 to=44)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=28)
gwf2_scaffold_2030_26
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists


comp(25869..26636)
-----------------
DNA (768bp)
protein (256aa)
ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Haloplasma contractile SSD-17B RepID=F7PTB9_9BACT
4-diphosphocytidyl-2C-methyl-D-erythritol kinase Tax=PER_GWF2_43_17
4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE (db=HMMPanther db_id=PTHR20861:SF2 from=55 to=223 evalue=1.2e-30 interpro_id=IPR004424 interpro_description=4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO=Biological Process: terpenoid biosynthetic process (GO:0016114), Molecular Function: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity (GO:0050515))
gwf2_scaffold_2030_27
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(26612..28264)
-----------------
DNA (1653bp)
protein (551aa)
coiled-coil Tax=PER_GWF2_43_17
coiled-coil (db=Coil db_id=coil from=470 to=491 evalue=NA)
gwf2_scaffold_2030_28
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

28606..28695
-----------------
DNA (90bp)
protein (30aa)
Tax=PER_GWF2_43_17
Displaying 28 items

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