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gwf2_scaffold_4067

Alias: PER_GWF2_43_18_14

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_4067_1
PER_GWF2_43_17, Peregrinibacteria, Bacteria

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comp(143..895)
DNA (753bp) protein (251aa)
seg Tax=PER_GWF2_43_17
seg (db=Seg db_id=seg from=49 to=65)
coiled-coil (db=Coil db_id=coil from=229 to=250 evalue=NA)
gwf2_scaffold_4067_2
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(906..5180)
DNA (4275bp) protein (1425aa)
Uncharacterized protein n=1 Tax=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) RepID=D1BK91_SANKS
hypothetical protein Tax=PER_GWF2_43_17
hypothetical protein
seg (db=Seg db_id=seg from=132 to=144)
gwf2_scaffold_4067_3
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(5188..5460)
DNA (273bp) protein (91aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT01471.1}; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_43_17.;"
gwf2_scaffold_4067_4
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

5633..6808
DNA (1176bp) protein (392aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT01472.1}; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_43_17.;"
(db=HMMPfam db_id=PF01609 from=90 to=306 evalue=4.1e-09 interpro_id=IPR002559 interpro_description=Transposase, IS4-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=91 to=321 evalue=6.1e-11 interpro_id=IPR012337 interpro_description=Ribonuclease H-like domain GO=Molecular Function: nucleic acid binding (GO:0003676))
gwf2_scaffold_4067_5
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(7085..7645)
DNA (561bp) protein (187aa)
seg Tax=PER_GWF2_43_17
seg (db=Seg db_id=seg from=4 to=13)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=17 evalue=6.0)
gwf2_scaffold_4067_6
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(7672..10296)
DNA (2625bp) protein (875aa)
ATPase, AAA family n=2 Tax=Dictyoglomus RepID=B5YDK7_DICT6 rbh
ATPase; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC Tax=PER_GWF2_43_17
ATPase AAA-2
seg (db=Seg db_id=seg from=335 to=349)
gwf2_scaffold_4067_7
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

10458..11210
DNA (753bp) protein (251aa)
PROKAR_LIPOPROTEIN Tax=PER_GWF2_43_17
(db=HMMPfam db_id=PF00413 from=153 to=228 evalue=2.1e-05 interpro_id=IPR001818 interpro_description=Peptidase M10, metallopeptidase GO=Molecular Function: metalloendopeptidase activity (GO:0004222), Biological Process: proteolysis (GO:0006508), Molecular Function: zinc ion binding (GO:0008270), Cellular Component: extracellular matrix (GO:0031012))
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=15 evalue=5.0)
Metalloproteases ("zincins"), catalytic domain (db=superfamily db_id=SSF55486 from=159 to=236 evalue=9.0e-09)
gwf2_scaffold_4067_8
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(11488..12720)
DNA (1233bp) protein (411aa)
seg Tax=PER_GWF2_43_17
seg (db=Seg db_id=seg from=8 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwf2_scaffold_4067_9
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(12770..13924)
DNA (1155bp) protein (385aa)
seg Tax=PER_GWF2_43_17
seg (db=Seg db_id=seg from=5 to=19)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
gwf2_scaffold_4067_10
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

14041..14940
DNA (900bp) protein (300aa)
Alpha-L-glutamate ligase, RimK family n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H686_ANADF
alpha-L-glutamate ligase; K05844 ribosomal protein S6 modification protein Tax=PER_GWF2_43_17
alpha-L-glutamate ligase
no description (db=Gene3D db_id=G3DSA:3.30.470.20 from=166 to=284 evalue=1.1e-17 interpro_id=IPR013816 interpro_description=ATP-grasp fold, subdomain 2 GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ligase activity (GO:0016874))
gwf2_scaffold_4067_11
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(14949..16133)
DNA (1185bp) protein (395aa)
Putative uncharacterized protein n=2 Tax=uncultured archaeon RepID=D1J9U0_9ARCH rbh
Permease of the major facilitator superfamily {ECO:0000313|EMBL:KKT01479.1}; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_43_17.;"
major facilitator superfamily permease
seg (db=Seg db_id=seg from=172 to=185)
gwf2_scaffold_4067_12
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(16130..16327)
DNA (198bp) protein (66aa)
Tax=PER_GWF2_43_17
gwf2_scaffold_4067_13
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

16349..17365
DNA (1017bp) protein (339aa)
MoaA/NifB/PqqE family protein; K04069 pyruvate formate lyase activating enzyme [EC:1.97.1.4] Tax=PER_GWF2_43_17
MoaA/nifB/pqqE family protein n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YKJ6_THEYD rbh
MoaA/nifB/pqqE family protein
no description (db=HMMSmart db_id=SM00729 from=72 to=276 evalue=0.00083 interpro_id=IPR006638 interpro_description=Elongator protein 3/MiaB/NifB GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))
gwf2_scaffold_4067_14
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

17407..18204
DNA (798bp) protein (266aa)
AMMECR1 domain protein n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S016_THEOJ
AMMECR1 domain-containing protein {ECO:0000313|EMBL:KKT01482.1}; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_43_17.;"
AMMECR1 domain-containing protein
seg (db=Seg db_id=seg from=8 to=19)
gwf2_scaffold_4067_15
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

18241..18753
DNA (513bp) protein (171aa)
AMMECR1 domain protein n=1 Tax=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) RepID=A8F4B8_THELT
Uncharacterized protein {ECO:0000313|EMBL:KKT01483.1}; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_43_17.;"
AMMECR1 domain-containing protein
AMMECR1 HOMOLOG (db=HMMPanther db_id=PTHR13016 from=46 to=107 evalue=1.1e-05 interpro_id=IPR023473 interpro_description=AMMECR1)
gwf2_scaffold_4067_16
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(18761..18886)
DNA (126bp) protein (42aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT01484.1}; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_43_17.;"
gwf2_scaffold_4067_17
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(18886..19506)
DNA (621bp) protein (207aa)
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] Tax=PER_GWF2_43_17
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=4 Tax=Brevibacillus RepID=C0ZAG2_BREBN
CLP_PROTEASE_SER (db=PatternScan db_id=PS00381 from=103 to=114 evalue=0.0 interpro_id=IPR018215 interpro_description=Peptidase S14, ClpP, active site GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
gwf2_scaffold_4067_18
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(19587..20558)
DNA (972bp) protein (324aa)
MGS domain protein n=1 Tax=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) RepID=C6XKE0_HIRBI
hypothetical protein Tax=PER_GWF2_43_17
hypothetical protein
seg (db=Seg db_id=seg from=6 to=17)
gwf2_scaffold_4067_19
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(20562..21893)
DNA (1332bp) protein (444aa)
Argininosuccinate lyase, argininosuccinate lyase {ECO:0000313|EMBL:KKT01487.1}; EC=4.3.2.1 {ECO:0000313|EMBL:KKT01487.1};; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacter
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CE80_THET1 rbh
seg (db=Seg db_id=seg from=2 to=9)
gwf2_scaffold_4067_16S_1
unknown

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22129..23630
DNA (1502bp)
Displaying 20 items

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