ggKbase home page

S34_3B_scaffold_71729

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S34_3B_scaffold_71729_1
GWB2_WOR_2_45_9_curated, WOR-2, Bacteria

Not on your lists

comp(1..159)
DNA (159bp) protein (53aa)
Putative hydrazine hydrolase B subunit id=2250260 bin=GWB2_CP_45_9 species=unknown genus=unknown taxon_order=unknown taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
Tax=GWB2_WOR_2_45_9_curated
S34_3B_scaffold_71729_2
R_Planctomycetes_38_41, Planctomycetes, Bacteria

Not on your lists

965..1633
DNA (669bp) protein (223aa)
Putative uncharacterized protein id=2648086 bin=GWC2_Planctomycete_KSU_39_26 species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Planctomycetes_38_41_curated
S34_3B_scaffold_71729_3
R_Planctomycetes_38_41, Planctomycetes, Bacteria

Not on your lists

1654..1821
DNA (168bp) protein (56aa)
Putative uncharacterized protein id=2752673 bin=GWA2_Planctomycete_KSU_39_15 species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Planctomycetes_38_41_curated
S34_3B_scaffold_71729_4

Not on your lists

2031..2804
DNA (774bp) protein (258aa)
Marine sediment metagenome DNA, contig: S03H2_S05997 {ECO:0000313|EMBL:GAH56760.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
hypothetical protein id=5802444 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
S34_3B_scaffold_71729_5
CG_Solirubrobact_01, Rubrobacteridae, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2996..3172
DNA (177bp) protein (59aa)
hypothetical protein ACCM5_15423 id=1874203 bin=GWB2_Nitrospirae_rel_47_37 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
plasmid maintenance system killer protein
Tax=CG_Solirubrobact_01
S34_3B_scaffold_71729_6
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

Not on your lists

3184..3486
DNA (303bp) protein (101aa)
Putative uncharacterized protein id=1874208 bin=GWB2_Nitrospirae_rel_47_37 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
plasmid maintenance system antidote protein
Tax=GWB2_Nitrospirae_47_37_curated
S34_3B_scaffold_71729_7
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

3725..3907
DNA (183bp) protein (61aa)
hypothetical protein ACCM5_15423 id=1874203 bin=GWB2_Nitrospirae_rel_47_37 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
plasmid maintenance system killer protein
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
S34_3B_scaffold_71729_8
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

3918..4220
DNA (303bp) protein (101aa)
Putative integron gene cassette protein id=2250264 bin=GWB2_CP_45_9 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
XRE family transcriptional regulator
Tax=CG_Anaero_02
S34_3B_scaffold_71729_9
R_Planctomycetes_38_41, Planctomycetes, Bacteria

Not on your lists

comp(4265..5668)
DNA (1404bp) protein (468aa)
Two-component response regulator id=4301262 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
Fis family two component sigma-54 specific transcriptional regulator
Tax=RIFCSPHIGHO2_02_FULL_Planctomycetes_38_41_curated
S34_3B_scaffold_71729_10
R_Planctomycetes_38_41, Planctomycetes, Bacteria

Not on your lists

comp(5754..7685)
DNA (1932bp) protein (644aa)
Two-component sensor kinase id=4301259 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
integral membrane sensor signal transduction histidine kinase
Tax=RIFCSPHIGHO2_02_FULL_Planctomycetes_38_41_curated
S34_3B_scaffold_71729_11
R_Planctomycetes_38_41, Planctomycetes, Bacteria

Not on your lists

8056..8796
DNA (741bp) protein (247aa)
Putative methyltransferase id=5011898 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
type 12 methyltransferase
Tax=RIFCSPHIGHO2_02_FULL_Planctomycetes_38_41_curated
S34_3B_scaffold_71729_12
R_Planctomycetes_38_41, Planctomycetes, Bacteria

Not on your lists

8793..10739
DNA (1947bp) protein (649aa)
ABC transporter ATP-binding component id=4667939 bin=GWC2_Planctomycete_KSU_39_26 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
ABC transporter ATP-binding protein
Tax=RIFCSPHIGHO2_02_FULL_Planctomycetes_38_41_curated
S34_3B_scaffold_71729_13
R_Planctomycetes_38_41, Planctomycetes, Bacteria

Not on your lists

10822..11730
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=planctomycete KSU-1 RepID=I3IJZ9_9PLAN
TPR domain protein, putative component of TonB system
Tax=RIFCSPHIGHO2_02_FULL_Planctomycetes_38_41_curated
S34_3B_scaffold_71729_14
R_Planctomycetes_38_41, Planctomycetes, Bacteria

Not on your lists

11761..13176
DNA (1416bp) protein (472aa)
Putative uncharacterized protein id=5011895 bin=GWA2_Planctomycete_KSU_39_15 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
5'-nucleotidase
Tax=RIFCSPHIGHO2_02_FULL_Planctomycetes_38_41_curated
S34_3B_scaffold_71729_15
RLO_Planctomycetes_39_13, Planctomycetes, Bacteria

Not on your lists

comp(13162..13929)
DNA (768bp) protein (256aa)
Uncharacterized protein id=5011894 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
Tax=RIFCSPLOWO2_12_FULL_Planctomycetes_39_13_curated
S34_3B_scaffold_71729_16
RLO_Planctomycetes_39_13, Planctomycetes, Bacteria

Not on your lists

comp(14256..16763)
DNA (2508bp) protein (836aa)
Two-component sensor kinase id=2235431 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
putative PAS/PAC sensor protein
Tax=RIFCSPLOWO2_12_FULL_Planctomycetes_39_13_curated
S34_3B_scaffold_71729_17
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(16760..17809)
DNA (1050bp) protein (350aa)
Uncharacterized protein {ECO:0000313|EMBL:GAN32072.1}; TaxID=1197129 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
Uncharacterized protein id=2235430 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
hypothetical protein
S34_3B_scaffold_71729_18
RLO_Planctomycetes_39_13, Planctomycetes, Bacteria

Not on your lists

comp(18125..20365)
DNA (2241bp) protein (747aa)
TonB-dependent receptor id=2235429 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
TonB-dependent receptor
Tax=RIFCSPLOWO2_12_FULL_Planctomycetes_39_13_curated
S34_3B_scaffold_71729_19
GWB2_Planctomycetes_41_19_curated, Brocadiales, Planctomycetes, Bacteria

Not on your lists

20633..21646
DNA (1014bp) protein (338aa)
Uncharacterized protein id=3249355 bin=GWC2_Planctomycete_KSU_39_26 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
ribosomal-protein-alanine acetyltransferase
Tax=GWB2_Planctomycetes_41_19_curated
S34_3B_scaffold_71729_20
R_Planctomycetes_38_41, Planctomycetes, Bacteria

Not on your lists

21624..22478
DNA (855bp) protein (285aa)
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha (EC:4.2.1.2)
Fumarate hydratase alpha subunit id=2235424 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
Tax=RIFCSPHIGHO2_02_FULL_Planctomycetes_38_41_curated
S34_3B_scaffold_71729_21
R_Planctomycetes_38_41, Planctomycetes, Bacteria

Not on your lists

comp(22571..23395)
DNA (825bp) protein (275aa)
Hypothetical phage protein n=1 Tax=planctomycete KSU-1 RepID=I3IGL6_9PLAN
uracil DNA glycosylase
Tax=RIFCSPHIGHO2_02_FULL_Planctomycetes_38_41_curated
S34_3B_scaffold_71729_22
R_Planctomycetes_38_41, Planctomycetes, Bacteria

Not on your lists

comp(23420..24403)
DNA (984bp) protein (328aa)
Phosphoesterase domain-containing protein id=4954953 bin=GWC2_Planctomycete_KSU_39_26 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
phosphoesterase RecJ-like protein
Tax=RIFCSPHIGHO2_02_FULL_Planctomycetes_38_41_curated
S34_3B_scaffold_71729_23
RLO_Planctomycetes_39_13, Planctomycetes, Bacteria

Not on your lists

24564..26957
DNA (2394bp) protein (798aa)
Glutamate synthase id=4954955 bin=GWC2_Planctomycete_KSU_39_26 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
glutamate synthase (NADPH), homotetrameric
Tax=RIFCSPLOWO2_12_FULL_Planctomycetes_39_13_curated
S34_3B_scaffold_71729_24
RLO_Planctomycetes_39_13, Planctomycetes, Bacteria

Not on your lists

26993..27193
DNA (201bp) protein (67aa)
Putative thiamine biosynthesis protein id=4954956 bin=GWC2_Planctomycete_KSU_39_26 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
sulfur carrier protein ThiS
Tax=RIFCSPLOWO2_12_FULL_Planctomycetes_39_13_curated
S34_3B_scaffold_71729_25
GWB2_Planctomycetes_41_19_curated, Brocadiales, Planctomycetes, Bacteria

Not on your lists

27177..27971
DNA (795bp) protein (265aa)
Thiazole synthase id=4954957 bin=GWC2_Planctomycete_KSU_39_26 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
thiG; thiamine biosynthesis protein ThiG
Tax=GWB2_Planctomycetes_41_19_curated
S34_3B_scaffold_71729_26
RLO_Planctomycetes_39_13, Planctomycetes, Bacteria

Not on your lists

28082..28858
DNA (777bp) protein (259aa)
Imidazole glycerol phosphate synthase subunit HisF id=2227936 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
hisF; imidazole glycerol phosphate synthase subunit HisF
Tax=RIFCSPLOWO2_12_FULL_Planctomycetes_39_13_curated
S34_3B_scaffold_71729_trna_1
unknown

Not on your lists

comp(29185..29258)
DNA (74bp)
transferRNA Met
S34_3B_scaffold_71729_27
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

29485..30219
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1P2_9BACT
Dolichol-phosphate mannosyltransferase {ECO:0000313|EMBL:GAN33212.1}; TaxID=1197129 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
family 2 glycosyl transferase
S34_3B_scaffold_71729_28
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

30372..31094
DNA (723bp) protein (241aa)
Uncharacterized protein n=3 Tax=Azotobacter vinelandii RepID=M9Y2E2_AZOVI
Uncharacterized protein {ECO:0000313|EMBL:GAN32465.1}; TaxID=1197129 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
hypothetical protein
S34_3B_scaffold_71729_29
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

31780..32574
DNA (795bp) protein (265aa)
Uncharacterized protein {ECO:0000313|EMBL:GAN34302.1}; TaxID=1197129 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
Uncharacterized protein id=4159574 bin=GWC2_Planctomycete_KSU_39_26 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
DNA-binding protein
Displaying items 1-30 of 63 in total

View Taxonomy