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S34_3B_scaffold_128563

Search features with annotation key words

Displaying items 1-30 of 134 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S34_3B_scaffold_128563_1
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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181..1419
DNA (1239bp) protein (413aa)
FolC bifunctional protein n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S229_THEOJ
bifunctional folylpolyglutamate synthase/dihydrofolate synthase
FolC bifunctional protein {ECO:0000313|EMBL:ADL07456.1}; TaxID=555079 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermosediminibacter.;" source="Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 /; JW/IW-1228P).;"
S34_3B_scaffold_128563_2
Parcubacteria bacterium GW2011_GWA1_42_7, Parcubacteria, Bacteria

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1462..1755
DNA (294bp) protein (98aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS70040.1}; TaxID=1618785 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_42_7.;"
hypothetical protein id=5042183 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
hypothetical protein
S34_3B_scaffold_128563_3
Parcubacteria bacterium GW2011_GWA1_42_7, Parcubacteria, Bacteria

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1752..2084
DNA (333bp) protein (111aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS70041.1}; TaxID=1618785 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_42_7.;"
hypothetical protein
hypothetical protein id=5241183 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
S34_3B_scaffold_128563_4
unknown

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comp(2147..2620)
DNA (474bp) protein (158aa)

This feature has no annotations

S34_3B_scaffold_128563_5
CG_Pacearch_03, Pacearchaeota, Archaea

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comp(2714..3187)
DNA (474bp) protein (158aa)
Putative uncharacterized protein id=5050194 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
Tax=CG_Pacearch_03
S34_3B_scaffold_128563_6
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3360..7046
DNA (3687bp) protein (1229aa)
UPI0003D1AA95 related cluster n=1 Tax=unknown RepID=UPI0003D1AA95
Mg-chelatase subunit ChlD {ECO:0000313|EMBL:ETA68274.1}; TaxID=1090322 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus tindarius DSM 2278.;"
hypothetical protein
S34_3B_scaffold_128563_7
AR4, Woesearchaeaota, DPANN, Archaea

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7102..7551
DNA (450bp) protein (150aa)
id=5048076 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR4
S34_3B_scaffold_128563_8
AR4, Woesearchaeaota, DPANN, Archaea

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7557..8195
DNA (639bp) protein (213aa)
id=5048077 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR4
S34_3B_scaffold_128563_9
AR4, Woesearchaeaota, DPANN, Archaea

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8186..8608
DNA (423bp) protein (141aa)
id=5048078 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR4
S34_3B_scaffold_128563_10
AR4, Woesearchaeaota, DPANN, Archaea

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8580..9488
DNA (909bp) protein (303aa)
id=5048079 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR4
S34_3B_scaffold_128563_11
unknown

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9552..9923
DNA (372bp) protein (124aa)

This feature has no annotations

S34_3B_scaffold_128563_12
unknown

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comp(10171..10758)
DNA (588bp) protein (196aa)

This feature has no annotations

S34_3B_scaffold_128563_13
R_OD1_Falkowbacteria_39_17, Falkowbacteria, Parcubacteria, Bacteria

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10839..11630
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037A6C08
transcriptional regulator TrmB
Tax=RIFCSPHIGHO2_02_FULL_OD1_Falkowbacteria_39_17_curated
S34_3B_scaffold_128563_14
CG_Woesearch_01, Woesearchaeota, Archaea

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11694..12104
DNA (411bp) protein (137aa)
resolvase, holliday junction-type; K03552 holliday junction resolvase, archaea type id=5046341 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Resolvase, Holliday junction-type
Tax=CG_Woesearch_01
S34_3B_scaffold_128563_15
unknown

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comp(12167..12556)
DNA (390bp) protein (130aa)

This feature has no annotations

S34_3B_scaffold_128563_16
unknown

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comp(12645..13391)
DNA (747bp) protein (249aa)

This feature has no annotations

S34_3B_scaffold_128563_17
CG_Woesearch_02, Woesearchaeota, Archaea

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13469..14839
DNA (1371bp) protein (457aa)
Signal recognition particle 54 kDa protein id=5800735 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
SRP54-type protein, GTPase protein
Tax=CG_Woesearch_02
S34_3B_scaffold_128563_18
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

15088..15432
DNA (345bp) protein (115aa)
rpl37ae; 50S ribosomal protein L37; K02921 large subunit ribosomal protein L37Ae id=5044064 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rpl37ae; 50S ribosomal protein L37
Tax=AR11
S34_3B_scaffold_128563_19

Not on your lists

15568..15804
DNA (237bp) protein (79aa)
Marine sediment metagenome DNA, contig: S01H1_S17826 {ECO:0000313|EMBL:GAG16424.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
S34_3B_scaffold_128563_20
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

15791..16153
DNA (363bp) protein (121aa)
erpK protein; K04798 prefoldin beta subunit id=5050960 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Prefoldin subunit beta
Tax=CG_Woesearch_02
S34_3B_scaffold_128563_21

Not on your lists

16131..16400
DNA (270bp) protein (90aa)
Uncharacterized protein conserved in archaea id=5799820 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein {ECO:0000313|EMBL:AJF61151.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
hypothetical protein
S34_3B_scaffold_128563_22
AR20, Woesearchaeaota, DPANN, Archaea

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comp(16397..16987)
DNA (591bp) protein (197aa)
Small-conductance mechanosensitive channel n=2 Tax=Thermococcus RepID=G0HKF9_THES4 id=5103554 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Small-conductance mechanosensitive channel
Tax=AR20
S34_3B_scaffold_128563_23

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17078..18466
DNA (1389bp) protein (463aa)
Translation initiation factor 2 subunit 3 {ECO:0000313|EMBL:KHO51065.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
Translation initiation factor 2 subunit gamma id=5800779 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
translation initiation factor 2 subunit gamma
S34_3B_scaffold_128563_24

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18505..19209
DNA (705bp) protein (235aa)
Marine sediment metagenome DNA, contig: S03H2_C00156 {ECO:0000313|EMBL:GAH28058.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PHP-like protein id=3345387 bin=GWF2_Lentisphaerae_50_93 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
S34_3B_scaffold_128563_25
Zootermopsis nevadensis, Zootermopsis, Isoptera, Neoptera, Arthropoda, Metazoa

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19285..20952
DNA (1668bp) protein (556aa)
Uncharacterized protein n=1 Tax=Chelonia mydas RepID=M7BF15_CHEMY
Ribosome-binding protein 1 {ECO:0000313|EMBL:KDR12442.1}; TaxID=136037 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Orthopteroidea; Dictyoptera; Isoptera; Termopsidae; Zootermopsis.;" source="Zootermopsis nevadensis (Dampwood termite).;"
S34_3B_scaffold_128563_26
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

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comp(20989..22467)
DNA (1479bp) protein (493aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000375227B
Tax=GWA2_WOR_2_47_8_curated
S34_3B_scaffold_128563_27

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22720..23637
DNA (918bp) protein (306aa)
Amidohydrolase 2 n=1 Tax=uncultured bacterium RepID=K2CIB8_9BACT
Amidohydrolase 2 {ECO:0000313|EMBL:EKD92675.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
S34_3B_scaffold_128563_28
unknown

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comp(23665..25677)
DNA (2013bp) protein (671aa)

This feature has no annotations

S34_3B_scaffold_128563_29
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(25690..26091)
DNA (402bp) protein (134aa)
Ribonuclease P protein component 4 id=5799801 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
Tax=CG_Woesearch_02
S34_3B_scaffold_128563_30
Thermoplasmatales archaeon SCGC AB-539-C06, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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26194..26715
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6WSM3_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ENO11943.1}; TaxID=1242690 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source="Thermoplasmatales archaeon SCGC AB-539-C06.;"
hypothetical protein
Displaying items 1-30 of 134 in total

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