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S35_SO-1_scaffold_88870

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S35_SO-1_scaffold_88870_1
Candidatus Scalindua brodae, Candidatus Scalindua, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

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1..1083
DNA (1083bp) protein (361aa)
3-dehydroquinate dehydratase (EC:1.1.1.25 4.2.1.10)
Similar to 3-dehydroquinate dehydratase / shikimate 5-dehydrogenase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0M3_9BACT
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|SAAS:SAAS00179162}; TaxID=237368 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Scalindua.;" source="Candidatus Scalindua brodae.;"
S35_SO-1_scaffold_88870_2
R_OD1_Kaiserbacteria_59_21, Kaiserbacteria, Parcubacteria, Bacteria

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1080..2174
DNA (1095bp) protein (365aa)
aroC; chorismate synthase; K01736 chorismate synthase [EC:4.2.3.5] id=5090619 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
chorismate synthase
Tax=RIFCSPHIGHO2_02_FULL_OD1_Kaiserbacteria_59_21_curated
S35_SO-1_scaffold_88870_3
Desulfococcus multivorans, Desulfococcus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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2158..3207
DNA (1050bp) protein (350aa)
Prephenate dehydrogenase n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7TCS6_DESML
Prephenate dehydrogenase {ECO:0000313|EMBL:EPR34330.1}; TaxID=1121405 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfococcus.;" source="Desulfococcus multivorans DSM 2059.;"
putative prephenate dehydrogenase
S35_SO-1_scaffold_88870_4
Bacteriovorax sp. DB6_IX, Bacteriovorax, Bdellovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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3167..3985
DNA (819bp) protein (273aa)
Prephenate dehydratase {ECO:0000256|RuleBase:RU361254}; Short=PDT {ECO:0000256|RuleBase:RU361254};; EC=4.2.1.51 {ECO:0000256|RuleBase:RU361254};; TaxID=1353530 species="Bacteria; Proteobacteria; Deltaproteobacteria; Bdellovibrionales; Bacteriovoracaceae; Bacteriovorax.;" source="Bacteriovorax sp. DB6_IX.;"
Prephenate dehydratase n=1 Tax=Bacteriovorax sp. DB6_IX RepID=T0RQV4_9DELT
bifunctional chorismate mutase/prephenate dehydrogenase
S35_SO-1_scaffold_88870_5
AR11, Woesearchaeaota, DPANN, Archaea

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4045..4389
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000363D148
Translation initiation factor 1A
Tax=AR11
S35_SO-1_scaffold_88870_6
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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4447..5055
DNA (609bp) protein (203aa)
Tax=RBG_13_Woesearchaeota_36_6_curated
S35_SO-1_scaffold_88870_7
Halothermothrix orenii, Halothermothrix, Halanaerobiales, Clostridia, Firmicutes, Bacteria

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comp(5072..5515)
DNA (444bp) protein (148aa)
lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase {ECO:0000255|HAMAP-Rule:MF_00161}; EC=3.4.23.36 {ECO:0000255|HAMAP-Rule:MF_00161};; Prolipoprotein signal peptidase {ECO:0000255|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000255|HAMAP-Rule:MF_00161}; Short=SPase II {ECO:0000255|HAMAP-Rule:MF_00161};; TaxID=373903 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halothermothrix.;" source="Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562).;"
Lipoprotein signal peptidase n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=LSPA_HALOH
S35_SO-1_scaffold_88870_8

Not on your lists

comp(5519..6457)
DNA (939bp) protein (313aa)
huntingtin interacting protein E-like protein id=5043674 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Huntingtin interacting protein E-like protein {ECO:0000313|EMBL:KHO46650.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
S35_SO-1_scaffold_88870_9
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(6534..6935)
DNA (402bp) protein (134aa)
Tax=RBG_13_Woesearchaeota_36_6_curated
S35_SO-1_scaffold_88870_10
unknown

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comp(6988..7146)
DNA (159bp) protein (53aa)

This feature has no annotations

S35_SO-1_scaffold_88870_11

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comp(7150..7860)
DNA (711bp) protein (237aa)
HhH-GPD family protein id=5800764 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
HhH-GPD family protein {ECO:0000313|EMBL:AJF62094.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
hypothetical protein
S35_SO-1_scaffold_88870_12
unknown

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comp(7913..8113)
DNA (201bp) protein (67aa)

This feature has no annotations

S35_SO-1_scaffold_88870_13

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comp(8116..8496)
DNA (381bp) protein (127aa)
30S ribosomal protein S8e n=2 Tax=Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) RepID=RS8E_PICTO id=5103085 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S8e {ECO:0000256|HAMAP-Rule:MF_00029, ECO:0000256|SAAS:SAAS00018121}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
30S ribosomal protein S8e
S35_SO-1_scaffold_88870_14
CG_Micra_05, Micraarchaeota, Archaea

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8662..9798
DNA (1137bp) protein (379aa)
Homospermidine synthase (Spermidine-specific) n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQA7_KORVE
deoxyhypusine synthase
Tax=CG_Micra_05
S35_SO-1_scaffold_88870_15
R_RIF_OD1_11_45_35, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

9795..10292
DNA (498bp) protein (166aa)
Nuclear protein SET n=1 Tax=Gloeocapsa sp. PCC 7428 RepID=K9X937_9CHRO
nuclear protein SET
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_45_35_curated
S35_SO-1_scaffold_88870_16
unknown

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10311..11483
DNA (1173bp) protein (391aa)

This feature has no annotations

S35_SO-1_scaffold_88870_17
RBG_16_Pacearchaeota_35_8_curated, Pacearchaeota, DPANN, Archaea

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11542..11964
DNA (423bp) protein (141aa)
hypothetical protein id=5042332 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Holliday junction resolvase-like protein
Tax=RBG_16_Pacearchaeota_35_8_curated
S35_SO-1_scaffold_88870_18
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(11969..12517)
DNA (549bp) protein (183aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP36799.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
S35_SO-1_scaffold_88870_19
unknown

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12637..12792
DNA (156bp) protein (52aa)

This feature has no annotations

S35_SO-1_scaffold_88870_20

Not on your lists

12789..13469
DNA (681bp) protein (227aa)
id=5047495 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45704.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
S35_SO-1_scaffold_88870_21

Not on your lists

13559..13783
DNA (225bp) protein (75aa)
Sm ribonucleoprotein-like protein; K04796 small nuclear ribonucleoprotein id=5048697 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Small nuclear ribonucleoprotein {ECO:0000313|EMBL:KHO45360.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Like-Sm ribonucleoprotein core
S35_SO-1_scaffold_88870_22
unknown

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14046..14447
DNA (402bp) protein (134aa)

This feature has no annotations

S35_SO-1_scaffold_88870_trna_1
unknown

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14623..14788
DNA (166bp)
transferRNA Pseudo
S35_SO-1_scaffold_88870_23
GWA2_OD1_31_28_partial, Parcubacteria, Bacteria

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14861..16039
DNA (1179bp) protein (393aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP29506.1}; TaxID=1618806 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_31_28.;"
id=2841826 bin=GWF2_Planctomycete_41_51 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
S35_SO-1_scaffold_88870_24
unknown

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comp(16067..16279)
DNA (213bp) protein (71aa)

This feature has no annotations

S35_SO-1_scaffold_88870_25
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16294..16521)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7GXC0_9FIRM
TM2 domain protein {ECO:0000313|EMBL:CDC03399.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
TM2 domain.
S35_SO-1_scaffold_88870_26
unknown

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comp(16552..17616)
DNA (1065bp) protein (355aa)
hypothetical protein
S35_SO-1_scaffold_88870_27
Bacillus methanolicus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(17619..17951)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Bacillus methanolicus PB1 RepID=I3DY56_BACMT
Uncharacterized protein {ECO:0000313|EMBL:EIJ79177.1}; TaxID=997296 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus methanolicus PB1.;"
membrane protein
S35_SO-1_scaffold_88870_28

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18067..18321
DNA (255bp) protein (85aa)
MarR family transcriptional regulator id=5048491 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
MarR family transcriptional regulator {ECO:0000313|EMBL:KHO45525.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
S35_SO-1_scaffold_88870_29
unknown

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comp(19123..19947)
DNA (825bp) protein (275aa)

This feature has no annotations

Displaying items 1-30 of 47 in total

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