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S35_SO-1_scaffold_237929

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S35_SO-1_scaffold_237929_1
unknown

Not on your lists

184..540
DNA (357bp) protein (119aa)

This feature has no annotations

S35_SO-1_scaffold_237929_2

Not on your lists

comp(587..991)
DNA (405bp) protein (135aa)
PilT protein domain protein n=1 Tax=mine drainage metagenome RepID=T1ASI2_9ZZZZ
PilT protein domain protein {ECO:0000313|EMBL:EQD43674.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
PilT protein
S35_SO-1_scaffold_237929_3
unknown

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comp(993..1217)
DNA (225bp) protein (75aa)

This feature has no annotations

S35_SO-1_scaffold_237929_4
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(1265..2206)
DNA (942bp) protein (314aa)
Galactose-1-phosphate uridylyltransferase; K00965 UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] id=5043631 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
galactose-1-phosphate uridylyltransferase
Tax=CG_Woesearch_02
S35_SO-1_scaffold_237929_5
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(2232..2717)
DNA (486bp) protein (162aa)
id=5044237 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
Tax=AR4
S35_SO-1_scaffold_237929_6
R_OD1_Yanofskybacteria_39_10, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

2727..3467
DNA (741bp) protein (247aa)
hypothetical protein n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B78F97
3-ketoacyl-ACP reductase
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_39_10_curated
S35_SO-1_scaffold_237929_7
unknown

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comp(3484..3813)
DNA (330bp) protein (110aa)

This feature has no annotations

S35_SO-1_scaffold_237929_8
CG_Woesearch_02, Woesearchaeota, Archaea

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3934..4596
DNA (663bp) protein (221aa)
Putative ski2-type helicase id=5800569 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DEAD/DEAH box helicase
Tax=CG_Woesearch_02
S35_SO-1_scaffold_237929_9

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4617..4886
DNA (270bp) protein (90aa)
hypothetical protein n=2 Tax=unclassified Aminicenantes RepID=UPI0003750F43
Marine sediment metagenome DNA, contig: S12H4_S01920 {ECO:0000313|EMBL:GAJ02603.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
S35_SO-1_scaffold_237929_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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4883..5218
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Aminicenantes bacterium SCGC AAA252-K06 RepID=UPI0003B637C0
Uncharacterized protein {ECO:0000313|EMBL:KCZ70528.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
S35_SO-1_scaffold_237929_11
unknown

Not on your lists

5331..6026
DNA (696bp) protein (232aa)

This feature has no annotations

S35_SO-1_scaffold_237929_12

Not on your lists

comp(6051..7580)
DNA (1530bp) protein (510aa)
ftsY; signal recognition particle receptor FtsY; K03110 fused signal recognition particle receptor id=5048740 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Fused signal recognition particle receptor {ECO:0000313|EMBL:KHO45403.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Signal recognition particle GTPase
S35_SO-1_scaffold_237929_13

Not on your lists

7680..8966
DNA (1287bp) protein (429aa)
elongation factor 1-alpha (EC:2.7.7.4); K03231 elongation factor 1-alpha id=5043694 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Elongation factor 1-alpha {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004060}; Short=EF-1-alpha {ECO:0000256|HAMAP-Rule:MF_00118};; Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
Elongation factor 1-alpha
S35_SO-1_scaffold_237929_14
unknown

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9105..9353
DNA (249bp) protein (83aa)

This feature has no annotations

S35_SO-1_scaffold_237929_15

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9766..10116
DNA (351bp) protein (117aa)
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508, ECO:0000256|SAAS:SAAS00243320}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
30S ribosomal protein S10 id=5800771 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rps10p; 30S ribosomal protein S10P
S35_SO-1_scaffold_237929_16
Cytophaga hutchinsonii, Cytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(10212..10952)
DNA (741bp) protein (247aa)
Putative uncharacterized protein n=1 Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=Q11SC4_CYTH3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG59690.1}; TaxID=269798 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Cytophaga.;" source="Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469).;"
S35_SO-1_scaffold_237929_17
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(10991..11644)
DNA (654bp) protein (218aa)
UPI000038E2D0 related cluster id=5800598 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
Tax=AR15
S35_SO-1_scaffold_237929_18
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

11819..13444
DNA (1626bp) protein (542aa)
anthranilate synthase component I (EC:4.1.3.27)
anthranilate synthase component I; K01657 anthranilate synthase component I [EC:4.1.3.27] id=5240918 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
S35_SO-1_scaffold_237929_19
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

Not on your lists

13446..14021
DNA (576bp) protein (192aa)
anthranilate synthase / indole-3-glycerol phosphate synthase (EC:4.1.3.27)
AER446Wp; K01656 anthranilate synthase / indole-3-glycerol phosphate synthase [EC:4.1.3.27 4.1.1.48] id=5240919 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Anthranilate synthase component 2 {ECO:0000313|EMBL:KKU99859.1}; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
S35_SO-1_scaffold_237929_20
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

Not on your lists

14018..15028
DNA (1011bp) protein (337aa)
Anthranilate phosphoribosyltransferase n=6 Tax=Clostridium thermocellum RepID=TRPD_CLOTH
Anthranilate phosphoribosyltransferase {ECO:0000313|EMBL:KKU99858.1}; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
anthranilate phosphoribosyltransferase
S35_SO-1_scaffold_237929_21
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

Not on your lists

15021..15776
DNA (756bp) protein (252aa)
bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (EC:4.1.1.48); K13498 indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24] id=5094731 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase {ECO:0000313|EMBL:KKU99857.1}; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
S35_SO-1_scaffold_237929_22
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

Not on your lists

15773..16399
DNA (627bp) protein (209aa)
indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase; K13498 indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24] id=5240921 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000313|EMBL:KKU99856.1}; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
S35_SO-1_scaffold_237929_23
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

Not on your lists

16430..17674
DNA (1245bp) protein (415aa)
tryptophan synthase beta chain (EC:4.2.1.20)
tryptophan synthase, beta subunit; K01696 tryptophan synthase beta chain [EC:4.2.1.20] id=5240922 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tryptophan synthase beta chain {ECO:0000313|EMBL:KKU99855.1}; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
S35_SO-1_scaffold_237929_24
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

Not on your lists

17724..18536
DNA (813bp) protein (271aa)
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) RepID=Q2NFE5_METST
Tryptophan synthase alpha chain {ECO:0000313|EMBL:KKU99854.1}; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
S35_SO-1_scaffold_237929_25
R_OP11_Roizmanbacteria_39_9, Roizmannbacteria, Microgenomates, Bacteria

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18544..18945
DNA (402bp) protein (134aa)
Tax=RIFCSPHIGHO2_02_FULL_OP11_Roizmanbacteria_39_9_curated
S35_SO-1_scaffold_237929_26
GWA2_OD1_31_28_partial, Parcubacteria, Bacteria

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comp(18979..19839)
DNA (861bp) protein (287aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome PF39_9ZZZZ">RepID=D9PF39_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KKP30761.1}; TaxID=1618806 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_31_28.;"
phage antirepressor protein
S35_SO-1_scaffold_237929_27
RifOxyA12_full_Deltaproteobacteria_61_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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20620..21636
DNA (1017bp) protein (339aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54); K03856 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] id=5097258 bin=PER_GWF2_39_17 species=PER_GWE2_38_7 genus=PER_GWE2_38_7 taxon_order=PER_GWE2_38_7 taxon_class=PER_GWE2_38_7 phylum=PER tax=PER_GWF2_39_17 organism_group=PER (Peregrinibacteria)
aroF-B; phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
Tax=RifOxyA12_full_Deltaproteobacteria_61_11_curated
S35_SO-1_scaffold_237929_28
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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21748..22848
DNA (1101bp) protein (367aa)
3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4] id=14425196 bin=bin1_lowGC species=Clostridium sp. CAG:264 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
aroB; 3-dehydroquinate synthase (EC:4.2.3.4)
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
S35_SO-1_scaffold_237929_29
R_Nitrospirae_40_19, Nitrospirae, Bacteria

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22864..25140
DNA (2277bp) protein (759aa)
3-phosphoshikimate 1-carboxyvinyltransferase id=4305226 bin=GWA2_OP3_52_12 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
3-phosphoshikimate 1-carboxyvinyltransferase
Tax=RIFCSPHIGHO2_02_FULL_Nitrospirae_40_19_curated
Displaying 29 items

View Taxonomy