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S35_SO-1_scaffold_256882

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S35_SO-1_scaffold_256882_1
Thermoplasmatales archaeon SCGC AB-539-C06, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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223..813
DNA (591bp) protein (197aa)
DNA-directed RNA polymerase subunit E n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VV26_9EURY
DNA-directed RNA polymerase subunit E {ECO:0000313|EMBL:ENO11844.1}; TaxID=1242690 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source="Thermoplasmatales archaeon SCGC AB-539-C06.;"
DNA-directed RNA polymerase subunit E
S35_SO-1_scaffold_256882_2

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823..1008
DNA (186bp) protein (62aa)
rpoE2; DNA-directed RNA polymerase subunit E'; K03050 DNA-directed RNA polymerase subunit E" [EC:2.7.7.6] id=5049217 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA-directed RNA polymerase subunit E {ECO:0000313|EMBL:KHO45208.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KHO45208.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rpoE2; DNA-directed RNA polymerase subunit E'
S35_SO-1_scaffold_256882_3
Thermoplasmatales archaeon SCGC AB-539-C06, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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1013..1309
DNA (297bp) protein (99aa)
30S ribosomal protein S24e n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6WJW2_9EURY
30S ribosomal protein S24e {ECO:0000256|HAMAP-Rule:MF_00545}; TaxID=1242690 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source="Thermoplasmatales archaeon SCGC AB-539-C06.;"
30S ribosomal protein S24
S35_SO-1_scaffold_256882_4
Thermococcus nautili, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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1341..1526
DNA (186bp) protein (62aa)
30S ribosomal protein S27ae n=1 Tax=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=RS27A_THEKO
rps27AE; 30S ribosomal protein S27ae
30S ribosomal protein S27ae {ECO:0000256|HAMAP-Rule:MF_00777}; TaxID=195522 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus nautili.;"
S35_SO-1_scaffold_256882_5

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comp(1536..2423)
DNA (888bp) protein (296aa)
Uncharacterized protein (Fragment) id=5800444 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein {ECO:0000313|EMBL:AJF61775.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
hypothetical protein
S35_SO-1_scaffold_256882_6

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comp(2493..2810)
DNA (318bp) protein (106aa)
50S ribosomal protein L12 {ECO:0000256|HAMAP-Rule:MF_01478}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
50S ribosomal protein L12; K02869 large subunit ribosomal protein L12 id=5045961 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
50S ribosomal protein L12P
S35_SO-1_scaffold_256882_7
AR11, Woesearchaeaota, DPANN, Archaea

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comp(2841..3947)
DNA (1107bp) protein (369aa)
50S ribosomal protein L10 n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VVQ4_9EURY
rplP0; acidic ribosomal protein P0
Tax=AR11
S35_SO-1_scaffold_256882_8

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comp(3967..4647)
DNA (681bp) protein (227aa)
rpl1P; 50S ribosomal protein L1P; K02863 large subunit ribosomal protein L1 id=5049223 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Large subunit ribosomal protein L1 {ECO:0000313|EMBL:KHO45214.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
50S ribosomal protein L1
S35_SO-1_scaffold_256882_9
RBG_13_Lokiarchaeota_45_8_curated, Lokiarchaeota, Archaea

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4781..5233
DNA (453bp) protein (151aa)
Acetyltransferase n=1 Tax=uncultured bacterium RepID=K1ZC48_9BACT
hypothetical protein
Tax=RBG_13_Lokiarchaeota_45_8_curated
S35_SO-1_scaffold_256882_10
R_RIF_OD1_13_52_23, RIF-OD1-13, Parcubacteria, Bacteria

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comp(5462..5644)
DNA (183bp) protein (61aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_52_23_curated
S35_SO-1_scaffold_256882_11
GWA2_OD1_40_9, Nomurabacteria, Parcubacteria, Bacteria

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5750..7642
DNA (1893bp) protein (631aa)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Thermodesulfobacterium thermophilum RepID=UPI0003B76E86
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000313|EMBL:KKR78763.1}; TaxID=1618734 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA2_40_9.;"
deoxyxylulose-5-phosphate synthase
S35_SO-1_scaffold_256882_12
GWA2_OD1_40_9, Nomurabacteria, Parcubacteria, Bacteria

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8048..9118
DNA (1071bp) protein (357aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase IspG (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VS58_CLOSH
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase {ECO:0000313|EMBL:KKR78762.1}; TaxID=1618734 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA2_40_9.;"
S35_SO-1_scaffold_256882_13
unknown

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9371..9661
DNA (291bp) protein (97aa)

This feature has no annotations

S35_SO-1_scaffold_256882_14
GWA2_OD1_40_9, Nomurabacteria, Parcubacteria, Bacteria

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9826..10977
DNA (1152bp) protein (384aa)
hypothetical protein n=1 Tax=Orenia marismortui RepID=UPI0003673C7C
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000313|EMBL:KKR78761.1}; TaxID=1618734 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA2_40_9.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase
S35_SO-1_scaffold_256882_15
GWA2_OD1_40_9, Nomurabacteria, Parcubacteria, Bacteria

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10996..12147
DNA (1152bp) protein (384aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:2.7.7.60 4.6.1.12); K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12] id=5090670 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000313|EMBL:KKR78760.1}; Flags: Fragment;; TaxID=1618734 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA2_40_9.;"
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
S35_SO-1_scaffold_256882_16
CG_Nitrosp_02, Nitrospirae, Bacteria

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12205..13053
DNA (849bp) protein (283aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Caldanaerobacter subterraneus subsp. yonseiensis KB-1 RepID=U5CSF3_THEYO
ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
Tax=CG_Nitrosp_02
S35_SO-1_scaffold_256882_17
unknown

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13123..13341
DNA (219bp) protein (73aa)

This feature has no annotations

S35_SO-1_scaffold_256882_18

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13344..14297
DNA (954bp) protein (318aa)
Small subunit ribosomal protein S1, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000313|EMBL:KHO49716.1}; EC=1.17.1.2 {ECO:0000313|EMBL:KHO49716.1};; Flags: Fragment;; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Aquifex aeolicus (strain VF5) RepID=ISPH_AQUAE
lytB; LytB protein
S35_SO-1_scaffold_256882_19
AR11, Woesearchaeaota, DPANN, Archaea

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comp(14299..14754)
DNA (456bp) protein (152aa)
30S ribosomal protein S15/S13e id=5799745 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rps15p; 30S ribosomal protein S15P
Tax=AR11
S35_SO-1_scaffold_256882_20
unknown

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comp(15036..15176)
DNA (141bp) protein (47aa)

This feature has no annotations

S35_SO-1_scaffold_256882_21
Turneriella parva, Turneriella, Spirochaetia, Spirochaetes, Bacteria

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comp(15208..15957)
DNA (750bp) protein (250aa)
SPFH domain, Band 7 family protein n=1 Tax=Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H) RepID=I4B3L3_TURPD
SPFH domain, Band 7 family protein
SPFH domain, Band 7 family protein {ECO:0000313|EMBL:AFM11870.1}; Flags: Precursor;; TaxID=869212 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Turneriella.;" source="Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H); (Leptospira parva).;"
S35_SO-1_scaffold_256882_22

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16431..16880
DNA (450bp) protein (150aa)
cytochrome c oxidase subunit II (EC:1.9.3.1)
Uncharacterized protein id=5799602 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein {ECO:0000313|EMBL:AJF60933.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
S35_SO-1_scaffold_256882_23
R_OD1_Uhrbacteria_57_19, Uhrbacteria, Parcubacteria, Bacteria

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16927..17850
DNA (924bp) protein (308aa)
thioredoxin-disulfide reductase (EC:1.8.1.9)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=D6SLS5_9DELT
Tax=RIFCSPHIGHO2_02_FULL_OD1_Uhrbacteria_57_19_curated
S35_SO-1_scaffold_256882_24
unknown

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comp(18166..18621)
DNA (456bp) protein (152aa)

This feature has no annotations

S35_SO-1_scaffold_256882_25
GWC2_OD1_38_7, Parcubacteria, Bacteria

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18737..19321
DNA (585bp) protein (195aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ78665.1}; Flags: Fragment;; TaxID=1618920 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_38_7.;"
UPI000038E2D0 related cluster id=5800598 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
S35_SO-1_scaffold_256882_26
unknown

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comp(19333..19740)
DNA (408bp) protein (136aa)

This feature has no annotations

S35_SO-1_scaffold_256882_27
AR11, Woesearchaeaota, DPANN, Archaea

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comp(19841..20596)
DNA (756bp) protein (252aa)
diphthine synthase (EC:2.1.1.98)
Uncharacterized protein id=5799750 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Tax=AR11
S35_SO-1_scaffold_256882_28
unknown

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20656..20847
DNA (192bp) protein (64aa)

This feature has no annotations

S35_SO-1_scaffold_256882_29
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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20850..21107
DNA (258bp) protein (86aa)
RelE protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46DQ3_METBF
RelE/StbE replicon stabilization toxin {ECO:0000313|EMBL:AKB26675.1}; TaxID=1434100 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. MTP4.;"
RelE protein
S35_SO-1_scaffold_256882_30
[Oscillatoria] sp. PCC 6506, Kamptonema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(21158..21826)
DNA (669bp) protein (223aa)
Haloacid dehalogenase, type II {ECO:0000313|EMBL:CBN59411.1}; EC=3.8.1.2 {ECO:0000313|EMBL:CBN59411.1};; TaxID=272129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.;" source="[Oscillatoria] sp. PCC 6506.;"
Haloacid dehalogenase, type II n=1 Tax=Oscillatoria sp. PCC 6506 RepID=D8G9X1_9CYAN
2-haloalkanoic acid dehalogenase, type II
Displaying items 1-30 of 46 in total

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