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S35_SO-1_scaffold_138009

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S35_SO-1_scaffold_138009_1

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426..863
DNA (438bp) protein (146aa)
Transcription elongation factor Spt5 {ECO:0000256|HAMAP-Rule:MF_00950}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
NusG antitermination factor; K02601 transcriptional antiterminator NusG id=5043662 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
LSU ribosomal protein L24A Rpl24A
S35_SO-1_scaffold_138009_2

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897..1700
DNA (804bp) protein (268aa)
Large subunit ribosomal protein L11 {ECO:0000313|EMBL:KHO50741.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 id=5043660 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
LSU ribosomal protein L11P
S35_SO-1_scaffold_138009_3
unknown

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1765..2352
DNA (588bp) protein (196aa)

This feature has no annotations

S35_SO-1_scaffold_138009_4

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comp(2349..3182)
DNA (834bp) protein (278aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00562, ECO:0000256|SAAS:SAAS00160314}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00562, ECO:0000256|SAAS:SAAS00160312};; TaxID=1457870 species="Archaea; Euryarchaeota; environmental samples.;" source="uncultured marine group II/III euryarchaeote KM3_139_C07.;"
D-tyrosyl-tRNA(Tyr) deacylase id=4541657 bin=PER_GWC2_41_7 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Hypothetical protein
S35_SO-1_scaffold_138009_5
unknown

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comp(3306..3578)
DNA (273bp) protein (91aa)

This feature has no annotations

S35_SO-1_scaffold_138009_6
AR11, Woesearchaeaota, DPANN, Archaea

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3805..4005
DNA (201bp) protein (67aa)
id=4541659 bin=PER_GWC2_41_7 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Tax=AR11
S35_SO-1_scaffold_138009_7
AR11, Woesearchaeaota, DPANN, Archaea

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4286..4624
DNA (339bp) protein (113aa)
id=5043594 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Tax=AR11
S35_SO-1_scaffold_138009_8

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4670..7297
DNA (2628bp) protein (876aa)
Ca2+-transporting ATPase {ECO:0000313|EMBL:KHO50746.1}; EC=3.6.3.8 {ECO:0000313|EMBL:KHO50746.1};; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
cation-transporting ATPase A (EC:3.6.3.10)
Cation-transporting ATPase A, P type (ATPase, E1-E2 type) id=5800624 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
S35_SO-1_scaffold_138009_9
AR11, Woesearchaeaota, DPANN, Archaea

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7351..9348
DNA (1998bp) protein (666aa)
histone acetyltransferase, ELP3 family (EC:2.3.1.48)
Histone acetyltransferase, ELP3 family n=1 Tax=Methanococcus voltae (strain ATCC BAA-1334 / A3) RepID=D7DUI7_METV3
Tax=AR11
S35_SO-1_scaffold_138009_10
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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comp(9436..10044)
DNA (609bp) protein (203aa)
Tax=RBG_16_Micrarchaeota_49_10_curated
S35_SO-1_scaffold_138009_11
Halanaeroarchaeum sulfurireducens, Halanaeroarchaeum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(10226..11305)
DNA (1080bp) protein (360aa)
Transposase IS116/IS110/IS902 family protein n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KMT2_ARCVS
Transposase IS116/IS110/IS902 family protein {ECO:0000313|EMBL:AKH98667.1}; TaxID=1604004 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halanaeroarchaeum.;" source="Halanaeroarchaeum sulfurireducens.;"
transposase IS116/IS110/IS902 family protein
S35_SO-1_scaffold_138009_12
AR11, Woesearchaeaota, DPANN, Archaea

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11515..12456
DNA (942bp) protein (314aa)
nucleolar protein I id=5045336 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
RNA methylase, NOL1/NOP2/sun family
Tax=AR11
S35_SO-1_scaffold_138009_13

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comp(12466..12696)
DNA (231bp) protein (77aa)
Putative uncharacterized protein id=5047315 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO54093.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
S35_SO-1_scaffold_138009_14
AR19, Pacearchaeaota, DPANN, Archaea

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comp(12693..12977)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T1AS12_9ZZZZ
Tax=AR19
S35_SO-1_scaffold_138009_15
AR11, Woesearchaeaota, DPANN, Archaea

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comp(13037..13612)
DNA (576bp) protein (192aa)
transcription factor E; K03136 transcription initiation factor TFIIE subunit alpha id=5041815 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Transcription factor E
Tax=AR11
S35_SO-1_scaffold_138009_16

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13947..14369
DNA (423bp) protein (141aa)
Putative NUDIX hydrolase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJT5_NITGG
Uncharacterized protein {ECO:0000313|EMBL:KKS34687.1}; TaxID=1618927 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_42_13.;"
NTP pyrophosphohydrolase
S35_SO-1_scaffold_138009_17
unknown

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comp(14405..14542)
DNA (138bp) protein (46aa)

This feature has no annotations

S35_SO-1_scaffold_138009_18
Methanobrevibacter ruminantium, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(14558..15361)
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Methanobrevibacter ruminantium (strain ATCC 35063 / DSM 1093 / JCM 13430 / M1) RepID=D3E0U9_METRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADC47923.1}; TaxID=634498 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter ruminantium (strain ATCC 35063 / DSM 1093 / JCM; 13430 / M1) (Methanobacterium ruminantium).;"
S35_SO-1_scaffold_138009_19
AR11, Woesearchaeaota, DPANN, Archaea

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15660..17312
DNA (1653bp) protein (551aa)
PHP domain protein id=4935158 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
PHP domain-containing protein
Tax=AR11
S35_SO-1_scaffold_138009_20
Lysinibacillus sphaericus, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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17374..17610
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Lysinibacillus sphaericus OT4b.31 RepID=R7ZEH6_LYSSH
Uncharacterized protein {ECO:0000313|EMBL:EON72498.1}; TaxID=1285586 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lysinibacillus.;" source="Lysinibacillus sphaericus OT4b.31.;"
hypothetical protein
S35_SO-1_scaffold_138009_21
CG_Woesearch_01, Woesearchaeota, Archaea

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17793..18785
DNA (993bp) protein (331aa)
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12); K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] id=5045844 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12)
Tax=CG_Woesearch_01
S35_SO-1_scaffold_138009_22
RIFOXYA2_FULL_Elusimicrobia_39_19_curated, Elusimicrobia, Bacteria

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comp(18901..20667)
DNA (1767bp) protein (589aa)
id=12554997 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Abortive phage infection protein
Tax=RIFOXYA2_FULL_Elusimicrobia_39_19_curated
S35_SO-1_scaffold_138009_23

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comp(20885..21403)
DNA (519bp) protein (173aa)
Putative nucleic acid-binding protein, contains PIN domain n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BIT4_9EURY
putative nucleic acid-binding protein, contains PIN domain
Marine sediment metagenome DNA, contig: S03H2_S05290 {ECO:0000313|EMBL:GAH48878.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
S35_SO-1_scaffold_138009_24
Archaeoglobus profundus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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comp(21400..21699)
DNA (300bp) protein (100aa)
CopG domain protein DNA-binding domain protein n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RDN6_ARCPA
CopG family transcriptional regulator
CopG domain protein DNA-binding domain protein {ECO:0000313|EMBL:ADB58230.1}; TaxID=572546 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 /; Av18).;"
S35_SO-1_scaffold_138009_25
CG_Woesearch_01, Woesearchaeota, Archaea

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21782..22276
DNA (495bp) protein (165aa)
Probable tRNA pseudouridine synthase D id=5799863 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
tRNA pseudouridine synthase d trud
Tax=CG_Woesearch_01
Displaying 25 items

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