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S35_SO-1_scaffold_274412

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S35_SO-1_scaffold_274412_1
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..807
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C220_NITHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE16608.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
S35_SO-1_scaffold_274412_2
CG_Micra_03, Micraarchaeota, Archaea

Not on your lists

comp(1008..2378)
DNA (1371bp) protein (457aa)
Tax=CG_Micra_03
S35_SO-1_scaffold_274412_3
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


comp(2622..3026)
DNA (405bp) protein (135aa)
Ribosomal protein L13 suspected. See adjacent gene [S35_SO-1_scaffold_274412_4].
Tax=CG_Woesearch_02
30S ribosomal protein S9
30S ribosomal protein S9 n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZF5_METFV id=5103678 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
S35_SO-1_scaffold_274412_4
AR20, Woesearchaeaota, DPANN, Archaea

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comp(3026..3439)
DNA (414bp) protein (138aa)
50S ribosomal protein L13P n=10 Tax=Thermococcus RepID=RL13_PYRKO id=5103680 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L13P
Tax=AR20
S35_SO-1_scaffold_274412_5
unknown

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comp(3441..3776)
DNA (336bp) protein (112aa)

This feature has no annotations

S35_SO-1_scaffold_274412_6
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(3778..4143)
DNA (366bp) protein (122aa)
50S ribosomal protein L18e n=2 Tax=Staphylothermus RepID=A3DMQ7_STAMF id=5103681 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L18e
Tax=CG_Woesearch_02
S35_SO-1_scaffold_274412_trna_2
unknown

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comp(4422..4520)
DNA (99bp)
transferRNA Leu
S35_SO-1_scaffold_274412_7
CG_Pacearch_01, Pacearchaeota, Archaea

Not on your lists

comp(4847..5278)
DNA (432bp) protein (144aa)
Tax=CG_Pacearch_01
S35_SO-1_scaffold_274412_8
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(5486..6283)
DNA (798bp) protein (266aa)
DNA-directed RNA polymerase subunit D n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I735_METCZ id=5103687 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-directed RNA polymerase subunit D
Tax=CG_Woesearch_02
S35_SO-1_scaffold_274412_9

Not on your lists


comp(6516..6914)
DNA (399bp) protein (133aa)
Marine sediment metagenome DNA, contig: S01H4_S05167 {ECO:0000313|EMBL:GAH02536.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
30S ribosomal protein S11 id=5799891 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rps11p; 30S ribosomal protein S11P
S35_SO-1_scaffold_274412_10

Not on your lists


comp(6916..7446)
DNA (531bp) protein (177aa)
30S ribosomal protein S4 n=1 Tax=Methanocaldococcus vulcanius (strain ATCC 700851 / DSM 12094 / M7) RepID=C9RDW0_METVM
Marine sediment metagenome DNA, contig: S01H1_L06460 {ECO:0000313|EMBL:GAF76524.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rps4p; 30S ribosomal protein S4
S35_SO-1_scaffold_274412_11
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


comp(7448..7927)
DNA (480bp) protein (160aa)
30S ribosomal protein S13P id=5799893 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S13
Tax=CG_Woesearch_02
S35_SO-1_scaffold_274412_12
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

comp(8447..9259)
DNA (813bp) protein (271aa)
Transposase IS4 family protein n=1 Tax=mine drainage metagenome RepID=T1B4R4_9ZZZZ
hypothetical protein
Tax=CG_Pacearch_02
S35_SO-1_scaffold_274412_trna_1
unknown

Not on your lists

9642..9823
DNA (182bp)
transferRNA His
S35_SO-1_scaffold_274412_13
R_OP11_Levybacteria_37_13, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(9825..10829)
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000372C0D6
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_OP11_Levybacteria_37_13_curated
S35_SO-1_scaffold_274412_14
Methanosarcina thermophila, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

10897..11289
DNA (393bp) protein (131aa)
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400}; TaxID=1434121 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina thermophila CHTI-55.;"
Peptide methionine sulfoxide reductase MsrB (EC:1.8.4.12)
Peptide methionine sulfoxide reductase MsrB n=1 Tax=Pontibacter sp. BAB1700 RepID=J0V5W3_9BACT id=5103583 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
S35_SO-1_scaffold_274412_15
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(11297..11812)
DNA (516bp) protein (172aa)
id=5048391 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR4
S35_SO-1_scaffold_274412_16
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(11824..12294)
DNA (471bp) protein (157aa)
hypothetical protein
id=5103666 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=CG_Woesearch_01
S35_SO-1_scaffold_274412_17
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

comp(12316..12657)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00035F928F
Nascent polypeptide-associated complex protein
Tax=CG_Woesearch_03
S35_SO-1_scaffold_274412_18
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(12662..12838)
DNA (177bp) protein (59aa)
id=5048386 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
Tax=AR4
S35_SO-1_scaffold_274412_19
unknown

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comp(13173..13508)
DNA (336bp) protein (112aa)

This feature has no annotations

S35_SO-1_scaffold_274412_20
RBG_13_RIF_OD1_08_40_8_curated, RIF-OD1-8, Parcubacteria, Bacteria

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comp(13939..15834)
DNA (1896bp) protein (632aa)
Tax=RBG_13_RIF_OD1_08_40_8_curated
Displaying 22 items

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