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S35_SO-1_scaffold_114017

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S35_SO-1_scaffold_114017_1
unknown

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3..167
DNA (165bp) protein (55aa)

This feature has no annotations

S35_SO-1_scaffold_114017_2
AR4, Woesearchaeaota, DPANN, Archaea

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comp(164..604)
DNA (441bp) protein (147aa)
NMD3-related protein (nonsense mediated mRNA decay); K07562 nonsense-mediated mRNA decay protein 3 id=5043728 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Nmd3
Tax=AR4
S35_SO-1_scaffold_114017_3

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comp(597..1679)
DNA (1083bp) protein (361aa)
3-isopropylmalate dehydrogenase {ECO:0000313|EMBL:CBH39239.1}; EC=1.1.1.85 {ECO:0000313|EMBL:CBH39239.1};; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=uncultured archaeon RepID=D1JAV9_9ARCH
S35_SO-1_scaffold_114017_4
CG_Micra_04, Micraarchaeota, Archaea

Not on your lists

1783..2097
DNA (315bp) protein (105aa)
Potassium channel protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q468D3_METBF
Potassium channel protein
Tax=CG_Micra_04
S35_SO-1_scaffold_114017_5
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(2130..4922)
DNA (2793bp) protein (931aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase id=5799918 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Tax=AR11
S35_SO-1_scaffold_114017_6

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comp(5064..5642)
DNA (579bp) protein (193aa)
hypothetical protein id=5049606 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO53644.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
S35_SO-1_scaffold_114017_7
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(6072..6269)
DNA (198bp) protein (66aa)
DNA-directed RNA polymerase subunit N (EC:2.7.7.6); K03058 DNA-directed RNA polymerase subunit N [EC:2.7.7.6] id=5045700 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
DNA-directed RNA polymerase subunit N
Tax=RBG_13_Woesearchaeota_36_6_curated
S35_SO-1_scaffold_114017_8
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


comp(6281..6682)
DNA (402bp) protein (134aa)
SSU ribosomal protein S9P id=5799887 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S9
Tax=CG_Woesearch_02
S35_SO-1_scaffold_114017_9

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comp(6679..7098)
DNA (420bp) protein (140aa)
50S ribosomal protein L13P n=10 Tax=Thermococcus RepID=RL13_PYRKO id=5103680 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Marine sediment metagenome DNA, contig: S01H1_S00916 {ECO:0000313|EMBL:GAF93287.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
50S ribosomal protein L13P
S35_SO-1_scaffold_114017_10
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


comp(7104..7469)
DNA (366bp) protein (122aa)
50S ribosomal protein L18e n=1 Tax=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) RepID=A3DMQ7_STAMF
50S ribosomal protein L18
Tax=CG_Woesearch_02
S35_SO-1_scaffold_114017_11
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(7734..8528)
DNA (795bp) protein (265aa)
RNA polymerase insert; K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] id=5049647 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
DNA-directed RNA polymerase subunit D
Tax=CG_Woesearch_02
S35_SO-1_scaffold_114017_12
unknown

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comp(8530..8622)
DNA (93bp) protein (31aa)

This feature has no annotations

S35_SO-1_scaffold_114017_13
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists


comp(8622..9020)
DNA (399bp) protein (133aa)
30S ribosomal protein S11 id=5799891 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rps11p; 30S ribosomal protein S11P
Tax=CG_Woesearch_03
S35_SO-1_scaffold_114017_14
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists


comp(9021..9545)
DNA (525bp) protein (175aa)
30S ribosomal protein S4 n=1 Tax=Thermosphaera aggregans (strain DSM 11486 / M11TL) RepID=D5U3F6_THEAM
30S ribosomal protein S4
Tax=RBG_13_Woesearchaeota_36_6_curated
S35_SO-1_scaffold_114017_15
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


comp(9547..10032)
DNA (486bp) protein (162aa)
30S ribosomal protein S13P id=5799893 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S13
Tax=CG_Woesearch_02
S35_SO-1_scaffold_114017_16
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

10569..10949
DNA (381bp) protein (127aa)
Peptide methionine sulfoxide reductase MsrB n=1 Tax=Pontibacter sp. BAB1700 RepID=J0V5W3_9BACT id=5103583 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Peptide methionine sulfoxide reductase MsrB
Tax=AR20
S35_SO-1_scaffold_114017_17
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(10950..11465)
DNA (516bp) protein (172aa)
id=5048391 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR4
S35_SO-1_scaffold_114017_18
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(11477..11950)
DNA (474bp) protein (158aa)
hypothetical protein
id=5103666 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=CG_Woesearch_01
S35_SO-1_scaffold_114017_19

Not on your lists

comp(11965..12306)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00035F928F
Nascent polypeptide-associated complex protein
Nascent polypeptide-associated complex protein {ECO:0000256|HAMAP-Rule:MF_00814}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
S35_SO-1_scaffold_114017_20
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(12317..12493)
DNA (177bp) protein (59aa)
id=5048386 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
Tax=RBG_13_Woesearchaeota_36_6_curated
Displaying 20 items

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