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S35_SO-1_scaffold_10491

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S35_SO-1_scaffold_10491_1
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(7..267)
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003624D48
50S ribosomal protein L23P
Tax=CG_Woesearch_02
S35_SO-1_scaffold_10491_2

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comp(270..1076)
DNA (807bp) protein (269aa)
50S ribosomal protein L4 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RL4_NANEQ id=5103253 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L4P, large subunit ribosomal protein L4e {ECO:0000313|EMBL:AJS12210.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L4
S35_SO-1_scaffold_10491_3

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comp(1078..2013)
DNA (936bp) protein (312aa)
50S ribosomal protein L3 {ECO:0000256|SAAS:SAAS00023038}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 id=5042300 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L3
S35_SO-1_scaffold_10491_4
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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2437..3756
DNA (1320bp) protein (440aa)
cell division control protein 6; K10725 archaeal cell division control protein 6 id=5046339 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
ORC1-type DNA replication protein
Tax=RBG_13_Woesearchaeota_36_6_curated
S35_SO-1_scaffold_10491_5
AR11, Woesearchaeaota, DPANN, Archaea

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3756..5243
DNA (1488bp) protein (496aa)
DNA polymerase II small subunit (EC:2.7.7.7); K02323 DNA polymerase II small subunit [EC:2.7.7.7] id=5046338 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
Tax=AR11
S35_SO-1_scaffold_10491_6
CG_Pacearch_05, Pacearchaeota, Archaea

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5245..10113
DNA (4869bp) protein (1623aa)
DNA polymerase II large subunit (EC:2.7.7.7)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037716FE
Tax=CG_Pacearch_05
S35_SO-1_scaffold_10491_7
unknown

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comp(10212..10844)
DNA (633bp) protein (211aa)

This feature has no annotations

S35_SO-1_scaffold_10491_8
AR4, Woesearchaeaota, DPANN, Archaea

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comp(11005..11418)
DNA (414bp) protein (138aa)
translation initiation factor IF-2 subunit beta; K03238 translation initiation factor 2 subunit 2 id=5041823 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Translation initiation factor 2 subunit beta
Tax=AR4
S35_SO-1_scaffold_10491_9
AR11, Woesearchaeaota, DPANN, Archaea

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11505..12356
DNA (852bp) protein (284aa)
Uncharacterized membrane protein id=5041824 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
Tax=AR11
S35_SO-1_scaffold_10491_10
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(12348..12941)
DNA (594bp) protein (198aa)
Nucleic acid-binding, OB-fold-like id=5800076 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
Tax=RBG_13_Woesearchaeota_36_6_curated
S35_SO-1_scaffold_10491_11

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comp(12943..14964)
DNA (2022bp) protein (674aa)
mcm; DNA replication initiator protein; K10726 replicative DNA helicase Mcm [EC:3.6.4.-] id=5046315 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA replication initiator protein, replicative DNA helicase Mcm {ECO:0000313|EMBL:KHO46116.1}; EC=3.6.4.- {ECO:0000313|EMBL:KHO46116.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
DNA replication initiator Cdc21/Cdc54
S35_SO-1_scaffold_10491_12

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comp(15061..15615)
DNA (555bp) protein (185aa)
tbpE; transcription factor; K03120 transcription initiation factor TFIID TATA-box-binding protein id=5046314 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
TATA-box-binding protein {ECO:0000256|HAMAP-Rule:MF_00408, ECO:0000256|RuleBase:RU000523}; Box A-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA sequence-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA-box factor {ECO:0000256|HAMAP-Rule:MF_00408}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
TATA-box-binding protein
S35_SO-1_scaffold_10491_13
AR11, Woesearchaeaota, DPANN, Archaea

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15943..16563
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037F7A10
Ribonuclease P protein component 3
Tax=AR11
S35_SO-1_scaffold_10491_14
unknown

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16560..17801
DNA (1242bp) protein (414aa)

This feature has no annotations

S35_SO-1_scaffold_10491_15
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

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17806..19233
DNA (1428bp) protein (476aa)
lnt; apolipoprotein N-acyltransferase (EC:2.3.1.-)
hypothetical protein n=1 Tax=Omnitrophica bacterium SCGC AAA252-B19 RepID=UPI00037D2423
Tax=GWB2_Nitrospirae_47_37_curated
S35_SO-1_scaffold_10491_16
AR11, Woesearchaeaota, DPANN, Archaea

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19217..21820
DNA (2604bp) protein (868aa)
Tax=AR11
S35_SO-1_scaffold_10491_17
CG_Woesearch_01, Woesearchaeota, Archaea

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21817..22779
DNA (963bp) protein (321aa)
seg id=5041845 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=CG_Woesearch_01
S35_SO-1_scaffold_10491_18
GWA2_OD1_31_28_partial, Parcubacteria, Bacteria

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22789..23904
DNA (1116bp) protein (372aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP27969.1}; Flags: Fragment;; TaxID=1618806 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_31_28.;"
S35_SO-1_scaffold_10491_19

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23901..29000
DNA (5100bp) protein (1700aa)
hypothetical protein n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI00035C118D
Uncharacterized protein {ECO:0000313|EMBL:KHO49224.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
hypothetical protein
S35_SO-1_scaffold_10491_20
AR11, Woesearchaeaota, DPANN, Archaea

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29075..29557
DNA (483bp) protein (161aa)
id=5046787 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Tax=AR11
S35_SO-1_scaffold_10491_21

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29559..30515
DNA (957bp) protein (319aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO49227.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
transmembrane_regions id=5041857 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
Displaying 21 items

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