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S36_SO-2_scaffold_285447

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S36_SO-2_scaffold_285447_1
Halorubrum tebenquichense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(1..840)
DNA (840bp) protein (280aa)
N-6 DNA methylase n=1 Tax=Halorubrum tebenquichense DSM 14210 RepID=M0DU38_9EURY
N-6 DNA methylase {ECO:0000313|EMBL:ELZ39000.1}; TaxID=1227485 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum tebenquichense DSM 14210.;"
N-6 DNA methylase
S36_SO-2_scaffold_285447_2
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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comp(885..1802)
DNA (918bp) protein (306aa)
Putative K+-dependent Na+/Ca+ exchanger n=1 Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2EXB6_9ARCH
Na+/Ca+ antiporter, CaCA family
Tax=RBG_16_Thaumarchaeota_49_8_curated
S36_SO-2_scaffold_285447_3
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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comp(1823..2299)
DNA (477bp) protein (159aa)
universal stress protein UspA-like protein
Tax=RBG_16_Thaumarchaeota_49_8_curated
S36_SO-2_scaffold_285447_4
RBG_16_Chloroflexi_58_14_curated, Chloroflexi, Bacteria

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comp(2461..3255)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MGT8_9EURY
hypothetical protein
Tax=RBG_16_Chloroflexi_58_14_curated
S36_SO-2_scaffold_285447_5
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(3380..4162)
DNA (783bp) protein (261aa)
DNA polymerase sliding clamp (Fragment) n=1 Tax=Candidatus Nitrososphaera gargensis RepID=D9ZB72_9ARCH
monomeric archaeal DNA polymerase sliding clamp
DNA polymerase sliding clamp {ECO:0000256|HAMAP-Rule:MF_00317, ECO:0000256|RuleBase:RU003673}; Proliferating cell nuclear antigen homolog {ECO:0000256|HAMAP-Rule:MF_00317}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
S36_SO-2_scaffold_285447_6
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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comp(4199..4546)
DNA (348bp) protein (116aa)
transcription termination factor Tfs; K03057 transcription elongation factor id=14428074 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
DNA-directed RNA polymerase subunit M
Tax=RBG_16_Thaumarchaeota_49_8_curated
S36_SO-2_scaffold_285447_7
unknown

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comp(4602..4925)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=uncultured archaeon RepID=I3RKW0_9ARCH
S36_SO-2_scaffold_285447_8

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comp(4922..5476)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=crenarchaeote SCGC AAA261-N13 RepID=UPI00036DFFF9
Transcriptional regulator XRE family {ECO:0000313|EMBL:AIE98867.1}; TaxID=1455979 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_100_D10.;"
transcriptional regulator, XRE family
S36_SO-2_scaffold_285447_9
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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5554..7254
DNA (1701bp) protein (567aa)
Succinate dehydrogenase flavoprotein subunit {ECO:0000313|EMBL:CDI06292.1}; EC=1.3.99.1 {ECO:0000313|EMBL:CDI06292.1};; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
sdhA; succinate dehydrogenase flavoprotein subunit/fumarate reductase (EC:1.3.99.1)
Succinate dehydrogenase flavoprotein subunit n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AUU4_9ARCH
S36_SO-2_scaffold_285447_10
Candidatus Caldiarchaeum subterraneum, Candidatus Caldiarchaeum, Thaumarchaeota, Archaea

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7255..7755
DNA (501bp) protein (167aa)
succinate dehydrogenase cytochrome b-556 subunit (EC:1.3.99.1)
Succinate dehydrogenase cytochrome b-556 subunit {ECO:0000313|EMBL:BAJ47754.1}; EC=1.3.99.1 {ECO:0000313|EMBL:BAJ47754.1};; TaxID=311458 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Candidatus Caldiarchaeum.;" source="Candidatus Caldiarchaeum subterraneum.;"
Succinate dehydrogenase cytochrome b-556 subunit n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N635_9ARCH
S36_SO-2_scaffold_285447_11
Candidatus Caldiarchaeum subterraneum, Candidatus Caldiarchaeum, Thaumarchaeota, Archaea

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7778..8113
DNA (336bp) protein (112aa)
succinate dehydrogenase subunit (EC:1.3.99.1)
Succinate dehydrogenase subunit {ECO:0000313|EMBL:BAJ47755.1}; EC=1.3.99.1 {ECO:0000313|EMBL:BAJ47755.1};; TaxID=311458 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Candidatus Caldiarchaeum.;" source="Candidatus Caldiarchaeum subterraneum.;"
Succinate dehydrogenase subunit n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N636_9ARCH
S36_SO-2_scaffold_285447_12
RBG_16_Archaea_50_20_curated, Archaea

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8123..8824
DNA (702bp) protein (234aa)
sdhB; FeS-center protein of succinate dehydrogenase/fumarate reductase
succinate dehydrogenase and fumarate reductase iron-sulfur protein id=14427513 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Tax=RBG_16_Archaea_50_20_curated
S36_SO-2_scaffold_285447_13
Sulfolobus solfataricus, Sulfolobus, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

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comp(8821..9645)
DNA (825bp) protein (275aa)
Fructose-bisphosphate aldolase (EC:4.1.2.13)
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:ACX91206.1}; EC=4.1.2.13 {ECO:0000313|EMBL:ACX91206.1};; TaxID=555311 species="Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus.;" source="Sulfolobus solfataricus (strain 98/2).;"
Fructose-bisphosphate aldolase n=1 Tax=Sulfolobus solfataricus (strain 98/2) RepID=D0KR37_SULS9
S36_SO-2_scaffold_285447_14
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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9739..10236
DNA (498bp) protein (166aa)
ferritin; K03594 bacterioferritin id=14427759 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
bacterioferritin
Tax=CSP1_1_Thaumarchaeota
S36_SO-2_scaffold_285447_15
unknown

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10504..11355
DNA (852bp) protein (284aa)

This feature has no annotations

S36_SO-2_scaffold_285447_16
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(11672..12352)
DNA (681bp) protein (227aa)
pyrH; uridylate kinase (EC:2.7.4.22)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00055191}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00055199};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Uridylate kinase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INK9_NITGG
S36_SO-2_scaffold_285447_17
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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12605..13654
DNA (1050bp) protein (350aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1090322 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus tindarius DSM 2278.;"
DNA-directed DNA polymerase (EC:2.7.7.7)
UPI0003D19FFC related cluster n=1 Tax=unknown RepID=UPI0003D19FFC
S36_SO-2_scaffold_285447_18
uncultured crenarchaeote, Crenarchaeota, Archaea

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13753..14994
DNA (1242bp) protein (414aa)
Peptide chain release factor eRF subunit 1 n=2 Tax=Crenarchaeota RepID=H5SVY6_9CREN
Peptide chain release factor eRF subunit 1 {ECO:0000313|EMBL:BAL60322.1}; TaxID=29281 species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
peptide chain release factor subunit 1 (aeRF-1)
S36_SO-2_scaffold_285447_19

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comp(15468..15992)
DNA (525bp) protein (175aa)
Alcohol dehydrogenase (Acceptor) (Gcd) {ECO:0000313|EMBL:AIF20598.1}; EC=1.1.5.2 {ECO:0000313|EMBL:AIF20598.1};; TaxID=1456345 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_90_H07.;"
S36_SO-2_scaffold_285447_20
Nitrosopumilus maritimus, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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16062..16676
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AS92_9ARCH
fibronectin type III domain-containing protein
Fibronectin type III domain protein {ECO:0000313|EMBL:ABX12969.1}; TaxID=436308 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Nitrosopumilus maritimus (strain SCM1).;"
S36_SO-2_scaffold_285447_21
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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17486..18046
DNA (561bp) protein (187aa)
Putative uncharacterized protein n=1 Tax=uncultured crenarchaeote RepID=Q701Z8_9CREN
putative RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)
Tax=RBG_16_Thaumarchaeota_49_8_curated
S36_SO-2_scaffold_285447_22
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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18120..19034
DNA (915bp) protein (305aa)
ilvE1; branched-chain amino-acid aminotransferase (EC:2.6.1.42)
Branched-chain amino-acid aminotransferase {ECO:0000313|EMBL:AFU59038.1}; EC=2.6.1.42 {ECO:0000313|EMBL:AFU59038.1};; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Branched-chain amino-acid aminotransferase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIX0_NITGG
S36_SO-2_scaffold_285447_23
RBG_16_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

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19045..19872
DNA (828bp) protein (276aa)
chorismate mutase / prephenate dehydratase (EC:4.2.1.51 5.4.99.5)
Chorismate mutase / prephenate dehydratase n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6P7T3_9ARCH
Tax=RBG_16_Chloroflexi_57_8_curated
S36_SO-2_scaffold_285447_24

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comp(19904..22018)
DNA (2115bp) protein (705aa)
Pyrrolo-quinoline quinone {ECO:0000313|EMBL:AIF20596.1}; EC=1.1.2.8 {ECO:0000313|EMBL:AIF20596.1};; TaxID=1456345 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_90_H07.;"
quinoprotein alcohol dehydrogenase (EC:1.1.99.8)
Quinoprotein alcohol dehydrogenase n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N4G7_9ARCH
S36_SO-2_scaffold_285447_25

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comp(22106..22975)
DNA (870bp) protein (290aa)
putative N-4 cytosine-specific methyltransferase (EC:2.1.1.113)
modification methylase n=1 Tax=Calescamantes bacterium SCGC AAA471-M6 RepID=UPI0003B54648
Cytosine methylase, similar to N4-cytosine methylase {ECO:0000313|EMBL:CAH04249.1}; TaxID=285013 species="Viruses; dsDNA viruses, no RNA stage; Bicaudaviridae; unclassified Bicaudaviridae.;" source="Sulfolobus virus STSV1.;"
S36_SO-2_scaffold_285447_26

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23048..23803
DNA (756bp) protein (252aa)
Methylase involved in ubiquinone/menaquinone biosynthesis (UbiE) {ECO:0000313|EMBL:AIE98852.1}; EC=2.1.1.163 {ECO:0000313|EMBL:AIE98852.1};; TaxID=1455979 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_100_D10.;"
Putative uncharacterized protein n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N5V2_ANATU
hypothetical protein
S36_SO-2_scaffold_285447_27

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23810..24511
DNA (702bp) protein (234aa)
Putative LmbE-like protein {ECO:0000313|EMBL:AIE95915.1}; TaxID=1455935 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote AD1000_71_A04.;"
Putative uncharacterized protein id=3476522 bin=GWF2_Lentisphaerae_49_21 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
hypothetical protein
S36_SO-2_scaffold_285447_28

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24567..25574
DNA (1008bp) protein (336aa)
NAD dependent epimerase/dehydratase family protein (GalE, GALE) {ECO:0000313|EMBL:AIE98854.1}; EC=5.1.3.2 {ECO:0000313|EMBL:AIE98854.1};; TaxID=1455979 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_100_D10.;"
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase id=5241100 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
S36_SO-2_scaffold_285447_29

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25597..26490
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Thermofilum sp. 1910b RepID=S5ZFP6_9CREN
Glycosyl transferase {ECO:0000313|EMBL:AIE90238.1}; TaxID=1455879 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote AD1000_01_F04.;"
hypothetical protein
S36_SO-2_scaffold_285447_30

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26500..27624
DNA (1125bp) protein (375aa)
Glycosyl transferase (ALG2) {ECO:0000313|EMBL:AIE95918.1}; EC=2.4.1.132 {ECO:0000313|EMBL:AIE95918.1};; TaxID=1455935 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote AD1000_71_A04.;"
Stackhouse genomic scaffold, scaffold_62 n=1 Tax=Chondrus crispus RepID=R7QR80_CHOCR
putative glycosyltransferase
Displaying items 1-30 of 32 in total

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