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14_1009_09_40cm_scaffold_1042

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Displaying items 1-30 of 37 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_1009_09_40cm_scaffold_1042_1
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

Not on your lists

1..609
DNA (609bp) protein (203aa)
fumarate hydratase (EC:4.2.1.2)
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit alpha id=3536890 bin=GWA1_Deltaproteobacteria_52_35 species=Bacillus macauensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
Tax=RBG_16_Caldithrix_48_16_curated
14_1009_09_40cm_scaffold_1042_2
unknown

Not on your lists

comp(606..1073)
DNA (468bp) protein (156aa)

This feature has no annotations

14_1009_09_40cm_scaffold_1042_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(1249..1779)
DNA (531bp) protein (177aa)
Intracellular protease, PfpI family n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E7I4_METEZ
PfpI family intracellular protease
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
14_1009_09_40cm_scaffold_1042_4
CG_Elusi_04, Elusimicrobia, Bacteria

Not on your lists

1850..2608
DNA (759bp) protein (253aa)
methionine aminopeptidase (EC:3.4.11.18)
hypothetical protein n=1 Tax=Orenia marismortui RepID=UPI000379BEE2
Tax=CG_Elusi_04
14_1009_09_40cm_scaffold_1042_5
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(2605..3507)
DNA (903bp) protein (301aa)
von Willebrand factor, type A n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01T76_SOLUE
von Willebrand factor A
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
14_1009_09_40cm_scaffold_1042_6
CG_Delta_02, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3664..4311
DNA (648bp) protein (216aa)
Protein dedA, putative id=3943992 bin=GWC2_Deltaproteobacteria_66_88 species=Ricinus communis genus=Ricinus taxon_order=Malpighiales taxon_class=unknown phylum=Streptophyta tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
hypothetical protein
Tax=CG_Delta_02
14_1009_09_40cm_scaffold_1042_7
GWC2_Elusimicrobia_64_44_curated, Elusimicrobia, Bacteria

Not on your lists

4308..5594
DNA (1287bp) protein (429aa)
Sodium:dicarboxylate symporter id=2475632 bin=GWC2_Elusimicrobia_64_44 species=Pedobacter saltans genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWC2_Elusimicrobia_64_44 organism_group=Elusimicrobia organism_desc=Good
sodium:dicarboxylate symporter
Tax=GWC2_Elusimicrobia_64_44_curated
14_1009_09_40cm_scaffold_1042_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(5569..6306)
DNA (738bp) protein (246aa)
ABC-type uncharacterized transport system, permease component {ECO:0000313|EMBL:CDM66928.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
High-affinity nickel-transporter id=2136378 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfotomaculum carboxydivorans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
high-affinity nickel-transporter
14_1009_09_40cm_scaffold_1042_trna_1
unknown

Not on your lists

6451..6523
DNA (73bp)
transferRNA Ala
14_1009_09_40cm_scaffold_1042_9
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6531..6845)
DNA (315bp) protein (105aa)
YtxH-like protein {ECO:0000313|EMBL:GAM11705.1}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
14_1009_09_40cm_scaffold_1042_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

6883..7791
DNA (909bp) protein (303aa)
putative aminopeptidase id=14625109 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
putative aminopeptidase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
14_1009_09_40cm_scaffold_1042_11
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(7788..8567)
DNA (780bp) protein (260aa)
Sec-independent protein translocase protein TatC n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=TATC_KORVE
Sec-independent protein translocase TatC
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
14_1009_09_40cm_scaffold_1042_12
RBG_13_Aminicenantes_63_10_curated, Aminicenantes, Bacteria

Not on your lists

comp(8567..8908)
DNA (342bp) protein (114aa)
putative twin-arginine translocation protein TatA2; K03116 sec-independent protein translocase protein TatA id=16923390 bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
tatB; twin arginine-targeting protein translocase TatB
Tax=RBG_13_Aminicenantes_63_10_curated
14_1009_09_40cm_scaffold_1042_13
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

9351..10931
DNA (1581bp) protein (527aa)
Carboxyl-terminal protease n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IN73_KORVE
carboxyl-terminal protease
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
14_1009_09_40cm_scaffold_1042_14
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

11107..12198
DNA (1092bp) protein (364aa)
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=1 Tax=Microchaete sp. PCC 7126 RepID=UPI0003499CFA
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
14_1009_09_40cm_scaffold_1042_15
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

12167..12907
DNA (741bp) protein (247aa)
Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
ubiquinone/menaquinone biosynthesis methyltransferase (EC:2.1.1.-)
Demethylmenaquinone methyltransferase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LI57_CHLTF
14_1009_09_40cm_scaffold_1042_16
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(12926..14296)
DNA (1371bp) protein (457aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRB0_KORVE
Fis family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
14_1009_09_40cm_scaffold_1042_17
unknown

Not on your lists

comp(14309..15217)
DNA (909bp) protein (303aa)

This feature has no annotations

14_1009_09_40cm_scaffold_1042_18
unknown

Not on your lists

comp(15217..15501)
DNA (285bp) protein (95aa)

This feature has no annotations

14_1009_09_40cm_scaffold_1042_19
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(15759..16796)
DNA (1038bp) protein (346aa)
PAS/PAC sensor signal transduction histidine kinase id=3730798 bin=GWF2_Nitrospirae_44_13 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
PAS/PAC sensor signal transduction histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
14_1009_09_40cm_scaffold_1042_20
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(16793..17629)
DNA (837bp) protein (279aa)
peptidase A24A domain-containing protein; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] id=15192505 bin=GWC2_NOV_55_46 species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
leader peptidase PppA
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
14_1009_09_40cm_scaffold_1042_21
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(17629..18435)
DNA (807bp) protein (269aa)
Glycosyl transferase, family 2 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01W42_SOLUE
glycosyl transferase family protein
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABJ86123.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
14_1009_09_40cm_scaffold_1042_22
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

18472..19206
DNA (735bp) protein (245aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
tRNA pseudouridine synthase A n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SFD1_9BACT
truA; tRNA pseudouridine synthase A
14_1009_09_40cm_scaffold_1042_23
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

19247..20026
DNA (780bp) protein (260aa)
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] id=12556752 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
14_1009_09_40cm_scaffold_1042_24
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

20016..20825
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI00036FE2FE
cdsA; phosphatidate cytidylyltransferase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
14_1009_09_40cm_scaffold_1042_25
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

20822..21979
DNA (1158bp) protein (386aa)
dxr; 1-deoxy-D-xylulose-5-phosphate synthase (EC:1.1.1.267) rbh
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=DXR_THEYD rbh
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
14_1009_09_40cm_scaffold_1042_26
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

22040..23377
DNA (1338bp) protein (446aa)
Peptidase M50, putative membrane-associated zinc metallopeptidase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRS8_KORVE
peptidase M50, membrane-associated zinc metallopeptidase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
14_1009_09_40cm_scaffold_1042_27
Desulfovibrio gigas, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23374..23814
DNA (441bp) protein (147aa)
Putative Fur family transcriptional regulator n=1 Tax=Desulfovibrio gigas DSM 1382 = ATCC 19364 RepID=T2GB82_DESGI
putative Fur family transcriptional regulator
Putative Fur family transcriptional regulator {ECO:0000313|EMBL:AGW13434.1}; TaxID=1121448 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio gigas DSM 1382 = ATCC 19364.;"
14_1009_09_40cm_scaffold_1042_28
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23863..24834)
DNA (972bp) protein (324aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; 4-hydroxythreonine-4-phosphate dehydrogenase; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0CXH1_RHILT
4-hydroxythreonine-4-phosphate dehydrogenase
14_1009_09_40cm_scaffold_1042_29
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(24857..25168)
DNA (312bp) protein (104aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02CR9_SOLUE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
Displaying items 1-30 of 37 in total

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