ggKbase home page

Ig9238_scaffold_68176

Search features with annotation key words

Displaying items 1-30 of 149 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig9238_scaffold_68176_1
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..590)
DNA (588bp) protein (196aa)
Uncharacterized protein (Fragment) Tax=Rhizobium sp. CF080 RepID=J2RJQ8_9RHIZ
2-methylcitrate dehydratase family protein
2-methylcitrate dehydratase family protein {ECO:0000313|EMBL:CDN57854.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
Ig9238_scaffold_68176_2
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(587..1636)
DNA (1050bp) protein (350aa)
Xaa-Pro aminopeptidase Tax=Rhizobium sp. CF080 RepID=J3BK12_9RHIZ
Creatinase {ECO:0000313|EMBL:EUC01219.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
Xaa-Pro aminopeptidase
Ig9238_scaffold_68176_3
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1646..2758)
DNA (1113bp) protein (371aa)
Xaa-Pro aminopeptidase Tax=Rhizobium sp. CF080 RepID=J2IAL1_9RHIZ
Peptidase M24 {ECO:0000313|EMBL:EUC01218.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
yqhT; Uncharacterized peptidase YqhT
Ig9238_scaffold_68176_4
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2755..4461)
DNA (1707bp) protein (569aa)
5-oxoprolinase (ATP-hydrolyzing) {ECO:0000313|EMBL:EUC01217.1}; EC=3.5.2.9 {ECO:0000313|EMBL:EUC01217.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
N-methylhydantoinase B/acetone carboxylase, alpha subunit Tax=Rhizobium sp. CF080 RepID=J3BLB5_9RHIZ
N-methylhydantoinase B
Ig9238_scaffold_68176_5
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4492..6546)
DNA (2055bp) protein (685aa)
N-methylhydantoinase A/acetone carboxylase, beta subunit Tax=Rhizobium sp. CF080 RepID=J2IWD3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGD87384.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
N-methylhydantoinase A
Ig9238_scaffold_68176_6
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6664..7584
DNA (921bp) protein (307aa)
Transcriptional regulator Tax=Rhizobium sp. CF080 RepID=J2RJQ4_9RHIZ
YwqM (Probable transcriptional regulator YwqM)
YwqM (Probable transcriptional regulator YwqM) {ECO:0000313|EMBL:CDN57849.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
Ig9238_scaffold_68176_7
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7775..8791
DNA (1017bp) protein (339aa)
Putative TIM-barrel fold metal-dependent hydrolase Tax=Rhizobium sp. CF080 RepID=J3AUU0_9RHIZ
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
Ig9238_scaffold_68176_8
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8830..9939
DNA (1110bp) protein (370aa)
FAD dependent oxidoreductase Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RJ84_9PROT
FAD-dependent oxidoreductase {ECO:0000313|EMBL:EWY41198.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
NAD binding site:FAD dependent oxidoreductase
Ig9238_scaffold_68176_9
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9979..11580)
DNA (1602bp) protein (534aa)
UPF0061 protein Metal_3699 Tax=Methylomicrobium album BG8 RepID=H8GHM6_METAL
UPF0061 protein ETSY2_42745 {ECO:0000256|HAMAP-Rule:MF_00692}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
Ig9238_scaffold_68176_10
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11746..12324
DNA (579bp) protein (193aa)
Putative dioxygenase Tax=Tistrella mobilis (strain KA081020-065) RepID=I3THZ4_TISMK
catA; putative dioxygenase
Putative dioxygenase {ECO:0000313|EMBL:AFK52382.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
Ig9238_scaffold_68176_11
Streptomyces fulvissimus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12611..13165
DNA (555bp) protein (185aa)
Intradiol ring-cleavage dioxygenase (EC:1.13.11.1)
Uncharacterized protein {ECO:0000313|EMBL:AGK78029.1}; EC=1.13.11.1 {ECO:0000313|EMBL:AGK78029.1};; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fulvissimus DSM 40593.;"
Intradiol ring-cleavage dioxygenase Tax=Streptomyces fulvissimus DSM 40593 RepID=N0CT13_9ACTO
Ig9238_scaffold_68176_12
Burkholderia terrae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13263..14516
DNA (1254bp) protein (418aa)
Putative terephthalate 1,2-dioxygenase, large subunit Tax=Burkholderia terrae BS001 RepID=I5CH55_9BURK
Putative terephthalate 1,2-dioxygenase, large subunit {ECO:0000313|EMBL:EIM95223.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia terrae BS001.;"
putative terephthalate 1,2-dioxygenase, large subunit
Ig9238_scaffold_68176_13
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14513..15010
DNA (498bp) protein (166aa)
hypothetical protein Tax=Bacillus sp. L1(2012) RepID=UPI00034711C4
small subunit aromatic oxygenase
Small subunit aromatic oxygenase {ECO:0000313|EMBL:AER57612.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
Ig9238_scaffold_68176_14
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15039..15494)
DNA (456bp) protein (152aa)
Large-conductance mechanosensitive channel Tax=gamma proteobacterium NOR5-3 RepID=B8KPS3_9GAMM
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
mscL; large-conductance mechanosensitive channel
Ig9238_scaffold_68176_15
Thauera aminoaromatica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15738..16502)
DNA (765bp) protein (255aa)
Uncharacterized protein Tax=Thauera RepID=C4ZJ55_THASP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ENO87695.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera aminoaromatica S2.;"
Ig9238_scaffold_68176_16
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16523..16834)
DNA (312bp) protein (104aa)
Uncharacterized protein Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6AWT0_PSERE
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
Ig9238_scaffold_68176_17
Calothrix parietina, Calothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(16836..17576)
DNA (741bp) protein (247aa)
adenylylsulfate reductase (EC:1.8.4.9)
Adenylylsulfate reductase, thioredoxin dependent {ECO:0000313|EMBL:AFZ00877.1}; EC=1.8.4.9 {ECO:0000313|EMBL:AFZ00877.1};; species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Calothrix.;" source="Calothrix sp. PCC 6303.;"
Adenylylsulfate reductase, thioredoxin dependent Tax=Calothrix sp. PCC 6303 RepID=K9V0E0_9CYAN
Ig9238_scaffold_68176_18
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18337..19617
DNA (1281bp) protein (427aa)
Flavodoxin reductase family protein Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YGZ8_THIV6
flavodoxin reductase family protein
Flavodoxin reductase family protein {ECO:0000313|EMBL:AFL76266.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium; violascens).;"
Ig9238_scaffold_68176_19
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19627..20205
DNA (579bp) protein (193aa)
Uncharacterized protein Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YGZ7_THIV6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL76265.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium; violascens).;"
Ig9238_scaffold_68176_20
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20202..20972
DNA (771bp) protein (257aa)
Class III cytochrome C family protein Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YGZ6_THIV6
class III cytochrome C family protein
Class III cytochrome C family protein {ECO:0000313|EMBL:AFL76264.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium; violascens).;"
Ig9238_scaffold_68176_21
unknown

Not on your lists

comp(21427..21666)
DNA (240bp) protein (80aa)

This feature has no annotations

Ig9238_scaffold_68176_22
unknown

Not on your lists

comp(21773..21940)
DNA (168bp) protein (56aa)

This feature has no annotations

Ig9238_scaffold_68176_23
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21937..22587)
DNA (651bp) protein (217aa)
Putative uncharacterized protein Tax=marine gamma proteobacterium HTCC2148 RepID=B7RYN3_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EEB78288.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium HTCC2148.;"
hypothetical protein
Ig9238_scaffold_68176_24
unknown

Not on your lists

comp(22596..23216)
DNA (621bp) protein (207aa)

This feature has no annotations

Ig9238_scaffold_68176_25
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23694..25439)
DNA (1746bp) protein (582aa)
Peptide transporter Tax=Pseudomonas stutzeri MF28 RepID=U3HSU7_PSEST
oligopeptide transporter, OPT family
Oligopeptide transporter, OPT family {ECO:0000313|EMBL:BAQ18044.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
Ig9238_scaffold_68176_26
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25702..25875
DNA (174bp) protein (58aa)
Uncharacterized conserved protein Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SWT5_JANMA
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:ABR91831.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
Ig9238_scaffold_68176_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26645..27691
DNA (1047bp) protein (349aa)
Immunogenic protein Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBH6_PELHB
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Ig9238_scaffold_68176_28
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27698..29659
DNA (1962bp) protein (654aa)
TRAP transporter 4TM/12TM fusion protein bin=GWA2_Methylomirabilis_73_35 species=Polymorphum gilvum genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TRAP transporter 4TM/12TM fusion protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Ig9238_scaffold_68176_29
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29858..31036
DNA (1179bp) protein (393aa)
Major facilitator superfamily MFS_1 bin=GWF2_Methylomirabilis_70_14 species=Paenibacillus vortex genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
Ig9238_scaffold_68176_trna_1
unknown

Not on your lists

comp(31322..31412)
DNA (91bp)
transferRNA SeC(p)
Displaying items 1-30 of 149 in total

View Taxonomy