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Ig9238_scaffold_175128

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Displaying items 1-30 of 96 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig9238_scaffold_175128_1
Ferrimonas balearica, Ferrimonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..142)
DNA (141bp) protein (47aa)
Elongation factor Tu Tax=Ferrimonas balearica (strain DSM 9799 / CCM 4581 / PAT) RepID=E1SLQ9_FERBD
translation elongation factor 1A (EF-1A/EF-Tu)
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Ferrimonadaceae; Ferrimonas.;" source="Ferrimonas balearica (strain DSM 9799 / CCM 4581 / PAT).;"
Ig9238_scaffold_175128_trna_4
unknown

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comp(225..297)
DNA (73bp)
transferRNA Thr
Ig9238_scaffold_175128_trna_3
unknown

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comp(331..401)
DNA (71bp)
transferRNA Gly
Ig9238_scaffold_175128_trna_2
unknown

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comp(464..545)
DNA (82bp)
transferRNA Tyr
Ig9238_scaffold_175128_2
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

792..2186
DNA (1395bp) protein (465aa)
hypothetical protein Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00037B72FC
SalD
SalD {ECO:0000313|EMBL:ACL73282.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
Ig9238_scaffold_175128_3
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2241..2741)
DNA (501bp) protein (167aa)
Transcription antitermination protein RfaH Tax=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) RepID=Q3J8A9_NITOC
transcriptional activator RfaH
Tax=RBG_16_Betaproteobacteria_58_11_curated
Ig9238_scaffold_175128_4
Marichromatium purpuratum, Marichromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2738..3493)
DNA (756bp) protein (252aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Marichromatium.;" source="Marichromatium purpuratum 984.;"
Peptidyl-tRNA hydrolase Tax=Marichromatium purpuratum 984 RepID=F9U3N0_MARPU
peptidyl-tRNA hydrolase
Ig9238_scaffold_175128_5
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3432..4070)
DNA (639bp) protein (213aa)
50S ribosomal protein L25 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=RL25_METCA
ctc; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
50S ribosomal protein L25 {ECO:0000255|HAMAP-Rule:MF_01334}; General stress protein CTC {ECO:0000255|HAMAP-Rule:MF_01334}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
Ig9238_scaffold_175128_6
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4421..5404)
DNA (984bp) protein (328aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
Ribose-phosphate pyrophosphokinase Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RN11_ALLVD
Ig9238_scaffold_175128_trna_1
unknown

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comp(5430..5501)
DNA (72bp)
transferRNA Gln
Ig9238_scaffold_175128_7
endosymbiont of unidentified scaly snail isolate Monju, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5806..6681)
DNA (876bp) protein (292aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="endosymbiont of unidentified scaly snail isolate Monju.;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6B9S3_9GAMM
Ig9238_scaffold_175128_8
Ectothiorhodospira sp. PHS-1, Ectothiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6671..7249)
DNA (579bp) protein (193aa)
Outer-membrane lipoprotein LolB Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G1E0_9GAMM
Outer-membrane lipoprotein LolB {ECO:0000256|HAMAP-Rule:MF_00233, ECO:0000256|SAAS:SAAS00002103}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Ectothiorhodospira.;" source="Ectothiorhodospira sp. PHS-1.;"
outer membrane lipoprotein LolB
Ig9238_scaffold_175128_9
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7246..8847)
DNA (1602bp) protein (534aa)
hypothetical protein Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI000381FB97
hypothetical protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
Ig9238_scaffold_175128_10
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9259..10515
DNA (1257bp) protein (419aa)
glutamyl-tRNA reductase (EC:1.2.1.70)
Glutamyl-tRNA reductase Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FH08_9GAMM
Tax=BJP_IG2102_Gammaproteobacteria_62_140
Ig9238_scaffold_175128_11
Methylococcaceae bacterium Sn10-6, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10544..11629
DNA (1086bp) protein (362aa)
Peptide chain release factor 1 Tax=Methylomonas methanica (strain MC09) RepID=F9ZXN8_METMM
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae.;" source="Methylococcaceae bacterium Sn10-6.;"
peptide chain release factor 1
Ig9238_scaffold_175128_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11626..12486
DNA (861bp) protein (287aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
(protein release factor)-glutamine N5-methyltransferase (EC:2.1.1.-)
hypothetical protein Tax=Dyella ginsengisoli RepID=UPI0003482BD9
Ig9238_scaffold_175128_13
Marinobacterium sp. AK27, Marinobacterium, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12828..13580
DNA (753bp) protein (251aa)
hypothetical protein Tax=Marinobacterium rhizophilum RepID=UPI0003647976
Sulfur carrier protein adenylyltransferase ThiF {ECO:0000313|EMBL:KEA64615.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacterium.;" source="Marinobacterium sp. AK27.;"
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2
Ig9238_scaffold_175128_14
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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13577..13996
DNA (420bp) protein (140aa)
hypothetical protein Tax=Methylobacter marinus RepID=UPI00036F7620
Mov34/MPN/PAD-1 family protein
Mov34/MPN/PAD-1 family protein {ECO:0000313|EMBL:AAU90733.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
Ig9238_scaffold_175128_15
unknown

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comp(14037..14198)
DNA (162bp) protein (54aa)

This feature has no annotations

Ig9238_scaffold_175128_16
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14202..14801)
DNA (600bp) protein (200aa)
hypothetical protein Tax=Pseudomonas thermotolerans RepID=UPI000368D74A
acpH; acyl carrier protein phosphodiesterase
Acyl carrier protein phosphodiesterase {ECO:0000313|EMBL:BAN52748.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
Ig9238_scaffold_175128_17
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14857..15348)
DNA (492bp) protein (164aa)
Rod shape-determining protein MreD Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GL91_THISH
rod shape-determining protein MreD
Tax=BJP_IG2102_Gammaproteobacteria_62_140
Ig9238_scaffold_175128_18
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15345..16247)
DNA (903bp) protein (301aa)
Cell shape-determining protein MreC Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BQ54_9GAMM
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
cell shape-determining protein MreC
Ig9238_scaffold_175128_19
endosymbiont of Tevnia jerichonana, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16294..17337)
DNA (1044bp) protein (348aa)
Penicillin-binding protein 2 Tax=sulfur-oxidizing symbionts RepID=G2DE45_9GAMM
Rod shape-determining protein MreB {ECO:0000313|EMBL:EGW54289.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Tevnia jerichonana (vent Tica).;"
Rod shape-determining protein MreB
Ig9238_scaffold_175128_20
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17489..17776
DNA (288bp) protein (96aa)
Aspartyl-tRNA(Asn) amidotransferase subunit C / Glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.6 6.3.5.7)
hypothetical protein Tax=Arhodomonas aquaeolei RepID=UPI00037B5EC8
Tax=BJP_IG2102_Gammaproteobacteria_62_140
Ig9238_scaffold_175128_21
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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17788..19248
DNA (1461bp) protein (487aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
Glutamyl-tRNA(Gln) amidotransferase subunit A Tax=Thioflavicoccus mobilis 8321 RepID=L0H1Q1_9GAMM
glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase subunit A
Ig9238_scaffold_175128_22
Halorhodospira halochloris, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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19275..20720
DNA (1446bp) protein (482aa)
gatB; glutamyl-tRNA amidotransferase (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halochloris str. A.;"
glutamyl-tRNA amidotransferase subunit B Tax=Arhodomonas aquaeolei RepID=UPI00035E2C36
Ig9238_scaffold_175128_23
Ectothiorhodospira sp. PHS-1, Ectothiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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20753..21094
DNA (342bp) protein (114aa)
TraR/DksA family transcriptional regulator Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G495_9GAMM
TraR/DksA family transcriptional regulator
TraR/DksA family transcriptional regulator {ECO:0000313|EMBL:EHQ52632.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Ectothiorhodospira.;" source="Ectothiorhodospira sp. PHS-1.;"
Ig9238_scaffold_175128_24
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

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comp(21125..23434)
DNA (2310bp) protein (770aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XNS2_9BACT
hypothetical protein
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
Ig9238_scaffold_175128_25
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

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comp(23438..24127)
DNA (690bp) protein (230aa)
Haloacid dehalogenase, type II Tax=Anaeromyxobacter sp. (strain K) RepID=B4UEW2_ANASK
haloacid dehalogenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
Ig9238_scaffold_175128_26
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(24237..25031)
DNA (795bp) protein (265aa)
Predicted pyrophosphatase Tax=Nitrococcus mobilis Nb-231 RepID=A4BUP1_9GAMM
mazG; nucleoside triphosphate pyrophosphohydrolase
Tax=BJP_IG2102_Gammaproteobacteria_62_140
Displaying items 1-30 of 96 in total

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