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Ig9238_scaffold_7048

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Displaying items 1-30 of 45 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig9238_scaffold_7048_1
GWA2_Gallionellales_59_43_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..175)
DNA (174bp) protein (58aa)
thioredoxin bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
thioredoxin
Tax=GWA2_Gallionellales_59_43_curated
Ig9238_scaffold_7048_2
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

273..1853
DNA (1581bp) protein (527aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6AJG8_9PROT
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
Ig9238_scaffold_7048_3
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1854..2915)
DNA (1062bp) protein (354aa)
UPF0761 membrane protein EBAPG3_4120 Tax=Nitrosospira sp. APG3 RepID=M5DGA3_9PROT
ribonuclease BN
Tax=RBG_16_Betaproteobacteria_58_11_curated
Ig9238_scaffold_7048_4
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2967..3560
DNA (594bp) protein (198aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|SAAS:SAAS00064138};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
Flavoprotein wrba (Trp repressor binding protein) bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas spadix genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
wrbA; flavodoxin-like protein
Ig9238_scaffold_7048_5
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3557..3895
DNA (339bp) protein (113aa)
Putative membrane protein Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IT53_BORPD
hypothetical protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
Ig9238_scaffold_7048_6
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3915..4559)
DNA (645bp) protein (215aa)
DedA protein (DSG-1 protein) Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P355_AROAE
dedA; DedA protein
DedA protein (DSG-1 protein) {ECO:0000313|EMBL:CAI08259.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
Ig9238_scaffold_7048_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4564..5517)
DNA (954bp) protein (318aa)
Protein-export membrane protein SecF Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJX7_AZOSU
protein-export membrane protein, SecD/SecF family
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
Ig9238_scaffold_7048_8
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5554..7419)
DNA (1866bp) protein (622aa)
Protein translocase subunit SecD Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJX6_AZOSU
protein-export membrane protein, SecD/SecF family
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
Ig9238_scaffold_7048_9
Thauera sp. 27, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7433..7756)
DNA (324bp) protein (108aa)
Preprotein translocase subunit YajC Tax=Thauera RepID=N6X2X6_9RHOO
Preprotein translocase subunit YajC {ECO:0000313|EMBL:ENO75991.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 27.;"
yajC; preprotein translocase subunit YajC
Ig9238_scaffold_7048_10
GWA2_Gallionellales_55_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7795..8895)
DNA (1101bp) protein (367aa)
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase Tax=Sulfuricella denitrificans skB26 RepID=S6AMI3_9PROT
Tax=GWA2_Gallionellales_55_18_curated
Ig9238_scaffold_7048_11
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8953..12240)
DNA (3288bp) protein (1096aa)
hppA; pyrophosphatase (EC:3.6.1.1)
pyrophosphatase Tax=Methyloversatilis universalis RepID=UPI00037D96FE
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Ig9238_scaffold_7048_12
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12249..12902)
DNA (654bp) protein (218aa)
adenylate kinase Tax=Uliginosibacterium gangwonense RepID=UPI00035E3DA3
adenylate kinase family protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
Ig9238_scaffold_7048_13
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13004..13780)
DNA (777bp) protein (259aa)
3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
hypothetical protein Tax=Leeia oryzae RepID=UPI00036B939F
Ig9238_scaffold_7048_14
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13827..14006)
DNA (180bp) protein (60aa)
UPF0434 protein LHK_01103 Tax=Laribacter hongkongensis (strain HLHK9) RepID=Y1103_LARHH
conserved hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
Ig9238_scaffold_7048_15
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14006..15034)
DNA (1029bp) protein (343aa)
Tetraacyldisaccharide 4'-kinase Tax=Sulfuricella denitrificans skB26 RepID=S6ALX4_9PROT
tetraacyldisaccharide 4'-kinase
Tax=CG_Beta_01
Ig9238_scaffold_7048_16
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15065..15478)
DNA (414bp) protein (138aa)
Biopolymer transport protein ExbD/TolR Tax=Sulfuricella denitrificans skB26 RepID=S6AAE2_9PROT
Biopolymer transporter ExbD {ECO:0000313|EMBL:GAO35678.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
biopolymer transport protein ExbD/TolR
Ig9238_scaffold_7048_17
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15475..16083)
DNA (609bp) protein (203aa)
flagellar motor protein MotA Tax=Thiobacillus denitrificans RepID=UPI00037132B9
MotA/TolQ/ExbB proton channel
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
Ig9238_scaffold_7048_18
GWF2_Sideroxydans_59_14_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16762..17796
DNA (1035bp) protein (345aa)
exodeoxyribonuclease VII large subunit (EC:3.1.11.6); K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6] bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
xseA; exodeoxyribonuclease VII large subunit
Tax=GWF2_Sideroxydans_59_14_curated
Ig9238_scaffold_7048_19
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17860..18102
DNA (243bp) protein (81aa)
Putative uncharacterized protein Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LJA1_SYNFM
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
Ig9238_scaffold_7048_20
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18190..19125)
DNA (936bp) protein (312aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Ig9238_scaffold_7048_21
Methylophilaceae bacterium 11, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19137..20720)
DNA (1584bp) protein (528aa)
DNA mismatch repair protein MutL Tax=Methylotenera sp. 1P/1 RepID=UPI00036B6919
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium 11.;"
DNA mismatch repair protein MutL
Ig9238_scaffold_7048_22
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21181..23211
DNA (2031bp) protein (677aa)
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase Tax=uncultured Sulfuricurvum sp. RIFRC-1 RepID=K7SF80_9HELI
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Tax=CG_Beta_01
Ig9238_scaffold_7048_23
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23214..24350)
DNA (1137bp) protein (379aa)
N-acetylmuramoyl-L-alanine amidase Tax=Sulfuricella denitrificans skB26 RepID=S6AAE4_9PROT
N-acetylmuramoyl-L-alanine amidase
Tax=CG_Beta_01
Ig9238_scaffold_7048_24
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24500..24958)
DNA (459bp) protein (153aa)
hypothetical protein Tax=Chitiniphilus shinanonensis RepID=UPI000362E260
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB75820.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Ig9238_scaffold_7048_25
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24995..26050
DNA (1056bp) protein (352aa)
Epoxyqueuosine reductase {ECO:0000256|HAMAP-Rule:MF_00916}; EC=1.17.99.6 {ECO:0000256|HAMAP-Rule:MF_00916};; Queuosine biosynthesis protein QueG {ECO:0000256|HAMAP-Rule:MF_00916}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
Epoxyqueuosine reductase Tax=Methyloversatilis universalis FAM5 RepID=F5RHL8_9RHOO
4Fe-4S ferredoxin
Ig9238_scaffold_7048_26
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(26086..27573)
DNA (1488bp) protein (496aa)
Peptidase S10 serine carboxypeptidase Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BAK1_MEISD
peptidase S10 serine carboxypeptidase
Peptidase S10 serine carboxypeptidase {ECO:0000313|EMBL:ADH62523.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) (Thermus; silvanus).;"
Ig9238_scaffold_7048_27
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_52_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27690..28856
DNA (1167bp) protein (389aa)
Major facilitator superfamily MFS_1 Tax=Acidovorax sp. (strain JS42) RepID=A1W7N1_ACISJ
major facilitator superfamily transporter
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_52_10_curated
Ig9238_scaffold_7048_28
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28834..31371)
DNA (2538bp) protein (846aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SKB6_METPP
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
Ig9238_scaffold_7048_29
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31450..32745
DNA (1296bp) protein (432aa)
hypothetical protein Tax=Herbaspirillum sp. JC206 RepID=UPI0002F80CA7
extracellular solute-binding protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Ig9238_scaffold_7048_30
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32754..34439
DNA (1686bp) protein (562aa)
ABC-type transporter, integral membrane subunit Tax=Delftia sp. (strain Cs1-4) RepID=F6ATW8_DELSC
ABC transporter permease
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Displaying items 1-30 of 45 in total

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