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Ig9238_scaffold_74712

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig9238_scaffold_74712_1

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1..615
DNA (615bp) protein (205aa)
GTP-binding protein lepA Tax=sediment metagenome RepID=D9PJH1_9ZZZZ
GTP-binding protein lepA {ECO:0000313|EMBL:EFK96295.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
GTP-binding protein LepA
Ig9238_scaffold_74712_2

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616..1590
DNA (975bp) protein (325aa)
Signal peptidase I {ECO:0000313|EMBL:EFK96296.1}; EC=3.4.21.89 {ECO:0000313|EMBL:EFK96296.1};; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
signal peptidase I (EC:3.4.21.89)
Signal peptidase I Tax=sediment metagenome RepID=D9PJH2_9ZZZZ
Ig9238_scaffold_74712_3

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1635..1991
DNA (357bp) protein (119aa)
Transmembrane protein Tax=sediment metagenome RepID=D9PJH3_9ZZZZ
Transmembrane protein {ECO:0000313|EMBL:EFK96297.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
hypothetical protein
Ig9238_scaffold_74712_4
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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2000..2707
DNA (708bp) protein (236aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
Ribonuclease 3 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QMI6_AZOSU
ribonuclease III
Ig9238_scaffold_74712_5

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2704..3594
DNA (891bp) protein (297aa)
GTP-binding protein Era Tax=sediment metagenome RepID=D9PKI9_9ZZZZ
GTP-binding protein Era {ECO:0000313|EMBL:EFK95927.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
GTP-binding protein Era
Ig9238_scaffold_74712_6

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3591..4388
DNA (798bp) protein (266aa)
DNA repair protein recO Tax=sediment metagenome RepID=D9PKI8_9ZZZZ
DNA repair protein recO {ECO:0000313|EMBL:EFK95926.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
recO; DNA repair protein
Ig9238_scaffold_74712_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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4385..5158
DNA (774bp) protein (258aa)
pyridoxine 5''''-phosphate synthase Tax=Azoarcus toluclasticus RepID=UPI00036D5EE1
pyridoxine 5''-phosphate synthase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Ig9238_scaffold_74712_8
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

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5155..5532
DNA (378bp) protein (126aa)
hypothetical protein Tax=Halomonas sp. BJGMM-B45 RepID=UPI0003AF00E7
acpS; 4'-phosphopantetheinyl transferase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
Ig9238_scaffold_74712_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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5543..6568
DNA (1026bp) protein (342aa)
beta-hexosaminidase Tax=Methylophilus methylotrophus RepID=UPI0003656B87
beta-hexosaminidase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
Ig9238_scaffold_74712_10
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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6565..8382
DNA (1818bp) protein (606aa)
UvrABC system protein C Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9Z667_9NEIS
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans 2002.;"
excinuclease ABC subunit C
Ig9238_scaffold_74712_11
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8385..8984
DNA (600bp) protein (200aa)
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:CDW95258.1}; EC=2.7.8.5 {ECO:0000313|EMBL:CDW95258.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase Tax=Thiomonas intermedia (strain K12) RepID=D5WZV4_THIK1
Ig9238_scaffold_74712_trna_1
unknown

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9023..9095
DNA (73bp)
transferRNA Gly
Ig9238_scaffold_74712_trna_2
unknown

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9227..9297
DNA (71bp)
transferRNA Cys
Ig9238_scaffold_74712_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9269..9673)
DNA (405bp) protein (135aa)
Putative nucleic acid ATP-dependent helicase Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3R4N6_CUPTR
nucleic acid ATP-dependent helicase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Ig9238_scaffold_74712_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9685..10032)
DNA (348bp) protein (116aa)
GCN5-related N-acetyltransferase Tax=Thiorhodococcus drewsii AZ1 RepID=G2E8L1_9GAMM
GCN5-related N-acetyltransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Ig9238_scaffold_74712_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10190..10486)
DNA (297bp) protein (99aa)
Putative uncharacterized protein Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JME0_9GAMM
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Ig9238_scaffold_74712_15
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11046..12329
DNA (1284bp) protein (428aa)
Putative glucose/sorbosone dehydrogenase Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y2Y0_LEPCP
putative glucose/sorbosone dehydrogenase
Putative glucose/sorbosone dehydrogenase {ECO:0000313|EMBL:ACB35636.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
Ig9238_scaffold_74712_16
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12410..12739
DNA (330bp) protein (110aa)
Cytochrome c class I Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y2X9_LEPCP
cytochrome c class I
Cytochrome c class I {ECO:0000313|EMBL:ACB35635.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
Ig9238_scaffold_74712_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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12776..14914
DNA (2139bp) protein (713aa)
hypothetical protein Tax=Herbaspirillum sp. JC206 RepID=UPI0002D99A5D
TonB-dependent receptor
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
Ig9238_scaffold_74712_18
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(15044..17485)
DNA (2442bp) protein (814aa)
hypothetical protein Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00036DA2E2
TRAP transporter 4TM/12TM fusion protein
Tax=BJP_IG2069_Desfulfarculales_53_13
Ig9238_scaffold_74712_19
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(17513..18553)
DNA (1041bp) protein (347aa)
hypothetical protein Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00035E50F1
immunogenic protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
Ig9238_scaffold_74712_20
Pseudogulbenkiania sp. NH8B, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18683..22312)
DNA (3630bp) protein (1210aa)
Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase Tax=Pseudogulbenkiania sp. (strain NH8B) RepID=G2IWT7_PSEUL
pduQ; proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase
Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase {ECO:0000313|EMBL:BAK77829.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania sp. (strain NH8B).;"
Ig9238_scaffold_74712_21
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

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comp(22416..23369)
DNA (954bp) protein (318aa)
C4-dicarboxylate ABC transporter substrate-binding protein Tax=Cupriavidus sp. HPC(L) RepID=V2JHH3_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
Ig9238_scaffold_74712_22
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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23677..24855
DNA (1179bp) protein (393aa)
L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases-like protein Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y4G8_RAMTT
L-lactate dehydrogenase (FMN-dependent)-like protein
Tax=GWA2_Burkholderiales_64_37_curated
Ig9238_scaffold_74712_23
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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25138..25821
DNA (684bp) protein (228aa)
hypothetical protein Tax=Herbaspirillum sp. JC206 RepID=UPI0002F07D41
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:AAZ64023.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
Ig9238_scaffold_74712_24
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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25828..27222
DNA (1395bp) protein (465aa)
TcuA: flavoprotein used to oxidize tricarballylate to cis-aconitate Tax=Lutibaculum baratangense AMV1 RepID=V4RHC8_9RHIZ
tricarballylate dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
Displaying 26 items

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