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Ig9238_scaffold_2218

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig9238_scaffold_2218_1
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1302
DNA (1302bp) protein (434aa)
cytochrome oxidase subunit I Tax=Acidovorax radicis RepID=UPI00023770A3
cbb3-type cytochrome c oxidase subunit I
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Ig9238_scaffold_2218_2
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1342..1956
DNA (615bp) protein (205aa)
ccoO; cbb3-type cytochrome c oxidase subunit II (EC:1.9.3.1)
peptidase S41 Tax=Massilia niastensis RepID=UPI00037480B9
Cytochrome c oxidase, cbb3-type, subunit II {ECO:0000313|EMBL:EIJ36615.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
Ig9238_scaffold_2218_3
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1961..2128
DNA (168bp) protein (56aa)
Cbb3-type cytochrome oxidase component Tax=Hylemonella gracilis ATCC 19624 RepID=F3KPD6_9BURK
Cytochrome oxidase {ECO:0000313|EMBL:EYC51141.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
Cbb3-type cytochrome oxidase component
Ig9238_scaffold_2218_4
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2125..3039
DNA (915bp) protein (305aa)
cbb3-type cytochrome C oxidase subunit III (EC:1.9.3.1)
Cbb3-type cytochrome c oxidase subunit Tax=Herminiimonas arsenicoxydans RepID=A4G5L2_HERAR
Cbb3-type cytochrome c oxidase subunit {ECO:0000256|PIRNR:PIRNR000006}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
Ig9238_scaffold_2218_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3096..4505
DNA (1410bp) protein (470aa)
4Fe-4S ferredoxin bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
ccoG; iron-sulfur 4Fe-4S ferredoxin transmembrane protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
Ig9238_scaffold_2218_6
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4502..5017
DNA (516bp) protein (172aa)
Uncharacterized protein Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRZ5_ACCPU
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
Ig9238_scaffold_2218_7
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5057..5365
DNA (309bp) protein (103aa)
hypothetical protein bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
Ig9238_scaffold_2218_8
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5391..8159)
DNA (2769bp) protein (923aa)
acetyl-CoA synthetase Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00035F13AB
CoA-binding domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
Ig9238_scaffold_2218_9
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8169..8576)
DNA (408bp) protein (136aa)
C4-type zinc finger DksA/TraR family protein bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
C4-type zinc finger DksA/TraR family protein
Conjugal transfer protein TraR {ECO:0000313|EMBL:KFI19075.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oceani C-27.;"
Ig9238_scaffold_2218_10
Parasutterella excrementihominis CAG:233, Parasutterella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8576..8905)
DNA (330bp) protein (110aa)
Universal stress protein Tax=Proteobacteria RepID=D9Y2G4_9BURK
Universal stress family protein {ECO:0000313|EMBL:CCX86455.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sutterellaceae; Parasutterella; environmental samples.;" source="Parasutterella excrementihominis CAG:233.;"
putative universal stress protein UspA/Adenine nucleotide alpha hydrolases-like
Ig9238_scaffold_2218_11
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9015..9755)
DNA (741bp) protein (247aa)
Cyclic nucleotide-binding:Bacterial regulatory protein, Crp Tax=Dechloromonas aromatica (strain RCB) RepID=Q47H78_DECAR
cAMP-binding protein
Tax=GWA2_Rhodocyclales_65_20_curated
Ig9238_scaffold_2218_12
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9844..11277
DNA (1434bp) protein (478aa)
oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
Coproporphyrinogen-III oxidase Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CM50_SIDLE
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
Ig9238_scaffold_2218_13
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11305..12018
DNA (714bp) protein (238aa)
membrane protein Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI0003760E36
Uncharacterized protein {ECO:0000313|EMBL:EXI86401.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
hypothetical protein
Ig9238_scaffold_2218_14
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12167..12799
DNA (633bp) protein (211aa)
Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQN2_9BURK
carboxymuconolactone decarboxylase
Tax=CG_Rhodocyc_01
Ig9238_scaffold_2218_15
RIFOXYB12_FULL_Gallionellales_54_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12818..13696)
DNA (879bp) protein (293aa)
hypothetical protein
hypothetical protein; K06940 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tax=RIFOXYB12_FULL_Gallionellales_54_9_curated
Ig9238_scaffold_2218_16
RIFOXYB12_FULL_Gallionellales_54_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13846..15882)
DNA (2037bp) protein (679aa)
Adenylylsulfate reductase subunit alpha bin=GWE2_Gallionellales_58_10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
aprA; adenylylsulfate reductase subunit alpha
Tax=RIFOXYB12_FULL_Gallionellales_54_9_curated
Ig9238_scaffold_2218_17
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15927..16403)
DNA (477bp) protein (159aa)
APS reductase beta subunit bin=GWE2_Gallionellales_58_10 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
aprB; adenylylsulfate reductase subunit beta
Tax=RBG_16_Betaproteobacteria_56_24_curated
Ig9238_scaffold_2218_18
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16453..17661)
DNA (1209bp) protein (403aa)
sulfate adenylyltransferase (EC:2.7.7.4)
Sulfate adenylyltransferase Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CSK9_SIDLE
Tax=GWA2_Gallionellales_60_18_curated
Ig9238_scaffold_2218_19
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17711..18691)
DNA (981bp) protein (327aa)
DMSO reductase anchor subunit (DmsC) Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CSK6_SIDLE
DMSO reductase anchor subunit (DmsC)
DMSO reductase anchor subunit (DmsC) {ECO:0000313|EMBL:BAO30538.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
Ig9238_scaffold_2218_20
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18701..19432)
DNA (732bp) protein (244aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CSK7_SIDLE
4Fe-4S ferredoxin iron-sulfur binding domain protein
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
Ig9238_scaffold_2218_21
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19693..20892
DNA (1200bp) protein (400aa)
GAF sensor signal transduction histidine kinase (EC:2.7.3.-); K07673 two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] bin=GWF1_Burkholderiales_GWF1_66_17 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
GAF sensor signal transduction histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
Ig9238_scaffold_2218_22
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20896..21549
DNA (654bp) protein (218aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQP6_9BURK
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:BAP87448.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
Ig9238_scaffold_2218_23
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21569..22354)
DNA (786bp) protein (262aa)
Siroheme synthase Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CSG9_SIDLE
Siroheme synthase {ECO:0000256|HAMAP-Rule:MF_01646}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
uroporphyrin-III C-methyltransferase
Ig9238_scaffold_2218_24
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22351..22650)
DNA (300bp) protein (100aa)
HesB/YadR/YfhF-family protein Tax=Sulfuricella denitrificans skB26 RepID=S6AB38_9PROT
dsrR; HesB/YadR/YfhF-family protein
Tax=CG_Beta_01
Ig9238_scaffold_2218_25
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22682..24079)
DNA (1398bp) protein (466aa)
Cobyrinic acid A,C-diamide synthase Tax=Sulfuricella denitrificans skB26 RepID=S6AJI2_9PROT
dsrN; cobyrinic acid a,c-diamide synthase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
Ig9238_scaffold_2218_26
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24099..25268)
DNA (1170bp) protein (390aa)
Formate-dependent nitrite reductase, membrane component {ECO:0000313|EMBL:EWS63610.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
Polysulfide reductase bin=GWE1_Burkholderiales_65_30 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
polysulfide reductase NrfD
Ig9238_scaffold_2218_27
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25299..26057)
DNA (759bp) protein (253aa)
iron-sulfur cluster protein; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] bin=GWF1_Burkholderiales_GWF1_66_17 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Tetrathionate reductase subunit B {ECO:0000313|EMBL:GAO32855.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
dsrO; 4Fe-4S ferredoxin iron-sulfur binding domain protein
Ig9238_scaffold_2218_28
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26054..26473)
DNA (420bp) protein (140aa)
hypothetical protein bin=GWF1_Burkholderiales_GWF1_66_17 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
dsrJ; hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
Ig9238_scaffold_2218_29
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26482..28431)
DNA (1950bp) protein (650aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CSH5_SIDLE
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
Ig9238_scaffold_2218_30
GWA2_Gallionellales_59_43_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28472..29998)
DNA (1527bp) protein (509aa)
Putative uncharacterized protein Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CSH6_SIDLE
hypothetical protein
Tax=GWA2_Gallionellales_59_43_curated
Displaying items 1-30 of 51 in total

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