ggKbase home page

Ig9238_scaffold_6500

Search features with annotation key words

Displaying items 1-30 of 79 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig9238_scaffold_6500_1

Not on your lists

comp(2..169)
DNA (168bp) protein (56aa)
Putative uncharacterized protein Tax=uncultured bacterium RepID=Q93DW0_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:AAK56314.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Ig9238_scaffold_6500_2
unknown

Not on your lists

200..388
DNA (189bp) protein (63aa)

This feature has no annotations

Ig9238_scaffold_6500_3
CG_Syntroph_02, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(713..1864)
DNA (1152bp) protein (384aa)
Putative uncharacterized protein bin=GWA2_Ignavibacteria_55_11 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
hypothetical protein
Tax=CG_Syntroph_02
Ig9238_scaffold_6500_4
unknown

Not on your lists

comp(2721..2888)
DNA (168bp) protein (56aa)

This feature has no annotations

Ig9238_scaffold_6500_5
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3040..4413)
DNA (1374bp) protein (458aa)
ATP-dependent DNA helicase RecG Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GQT5_9BRAD
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:ERF79972.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
transcriptional regulator
Ig9238_scaffold_6500_6
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4725..5126)
DNA (402bp) protein (134aa)
hypothetical protein Tax=Thioalkalivibrio sp. AKL7 RepID=UPI00036E43BD
hypothetical protein
Tax=GWE2_Bacteroidetes_40_63_curated
Ig9238_scaffold_6500_7
Pseudomonas sp. MT-1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5302..5931)
DNA (630bp) protein (210aa)
Uncharacterized protein {ECO:0000313|EMBL:BAP77432.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. MT-1.;"
Putative uncharacterized protein bin=GWF2_Bacteroidetes_41_31 species=Kangiella koreensis genus=Kangiella taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
hypothetical protein
Ig9238_scaffold_6500_8
Idiomarina baltica, Idiomarina, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6311..7765)
DNA (1455bp) protein (485aa)
Uncharacterized protein Tax=Idiomarina baltica OS145 RepID=A3WN33_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EAQ31738.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina.;" source="Idiomarina baltica OS145.;"
hypothetical protein
Ig9238_scaffold_6500_9
Vibrio coralliilyticus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8517..9023)
DNA (507bp) protein (169aa)
hypothetical protein Tax=Pseudomonas luteola RepID=UPI000362E32F
Uncharacterized protein {ECO:0000313|EMBL:ERB62286.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio coralliilyticus OCN008.;"
hypothetical protein
Ig9238_scaffold_6500_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(9138..9797)
DNA (660bp) protein (220aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4CZT6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20250.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Ig9238_scaffold_6500_11
unknown

Not on your lists

10045..10200
DNA (156bp) protein (52aa)

This feature has no annotations

Ig9238_scaffold_6500_12

Not on your lists

11553..12557
DNA (1005bp) protein (335aa)
integrase Tax=Dyella ginsengisoli RepID=UPI00036C0D48
Putative integron integrase {ECO:0000313|EMBL:ACP39543.1}; Flags: Fragment;; species="unclassified sequences; environmental samples.;" source="uncultured microorganism.;"
integron integrase
Ig9238_scaffold_6500_13
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12627..13055)
DNA (429bp) protein (143aa)
hypothetical protein Tax=zeta proteobacterium SCGC AB-604-B04 RepID=UPI00035E0515
hypothetical protein
Tax=RBG_16_Gammaproteobacteria_51_14_curated
Ig9238_scaffold_6500_14
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13064..14398)
DNA (1335bp) protein (445aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
trpS; tryptophan--tRNA ligase (EC:6.1.1.2)
tryptophanyl-tRNA synthetase Tax=Ideonella sp. B508-1 RepID=UPI00034C079C
Ig9238_scaffold_6500_15
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14519..15304
DNA (786bp) protein (262aa)
Uncharacterized protein Tax=Xanthomonas translucens DAR61454 RepID=L7GRT4_XANCT
Uncharacterized protein {ECO:0000313|EMBL:KGM55064.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hypothetical protein
Ig9238_scaffold_6500_16
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15571..16551
DNA (981bp) protein (327aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL37539.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
Putative helix-turn-helix transcriptional regulator protein bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
DeoR family transcriptional regulator
Ig9238_scaffold_6500_17
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16544..17494
DNA (951bp) protein (317aa)
Uncharacterized protein {ECO:0000313|EMBL:KFN49822.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
Putative esterase of the alpha-beta hydrolase superfamily protein bin=GWF1_Xanthomonadales_69_6 species=Rhodanobacter spathiphylli genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
putative esterase of the alpha-beta hydrolase superfamily
Ig9238_scaffold_6500_18
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17676..18095
DNA (420bp) protein (140aa)
Uncharacterized protein Tax=Xanthomonas hortorum pv. carotae str. M081 RepID=V7Z8A4_9XANT
hypothetical protein
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
Ig9238_scaffold_6500_19
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18179..18643
DNA (465bp) protein (155aa)
hypothetical protein Tax=Thiobacillus thioparus RepID=UPI00036F132D
CRISPR-associated helicase Cas3
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
Ig9238_scaffold_6500_20
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18685..18924
DNA (240bp) protein (80aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=E6QU43_9ZZZZ
uncharacterized conserved protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
Ig9238_scaffold_6500_21

Not on your lists

18924..19289
DNA (366bp) protein (122aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=E6QU44_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10766.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
uncharacterized protein conserved in bacteria
Ig9238_scaffold_6500_22
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19301..19903
DNA (603bp) protein (201aa)
CRISPR-associated protein Cas4 Tax=Thiobacillus thioparus RepID=UPI00035E64F1
CRISPR-associated protein Cas4
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_6500_23
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20304..21791)
DNA (1488bp) protein (496aa)
Glutathione synthase/ribosomal protein S6 modification protein bin=GWF1_Xanthomonadales_69_6 species=Rhodanobacter sp. 115 genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
carboxylate--amine ligase
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
Ig9238_scaffold_6500_24
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22029..22502
DNA (474bp) protein (158aa)
GCN5-like N-acetyltransferase bin=GWF1_Xanthomonadales_69_6 species=Ectothiorhodospira sp. PHS-1 genus=Ectothiorhodospira taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
hypothetical protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_6500_25
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22571..24709
DNA (2139bp) protein (713aa)
Peptidase S9A prolyl oligopeptidase domain protein beta-propeller bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
peptidase S9A prolyl oligopeptidase domain-containing protein beta-propeller
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_6500_26
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24798..26939
DNA (2142bp) protein (714aa)
oligopeptidase B bin=GWF1_Xanthomonadales_69_6 species=Xanthomonas albilineans genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
protease II, oligopeptidase B
Tax=GWF1_Xanthomonadales_69_6_curated
Ig9238_scaffold_6500_27
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27073..27723)
DNA (651bp) protein (217aa)
Putative membrane protein Tax=Bordetella bronchiseptica 253 RepID=K4QNV6_BORBO
hypothetical protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_6500_28
unknown

Not on your lists

27728..27889
DNA (162bp) protein (54aa)

This feature has no annotations

Ig9238_scaffold_6500_29
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27896..28756
DNA (861bp) protein (287aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
diaminopimelate epimerase Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000373EC4F
diaminopimelate epimerase
Ig9238_scaffold_6500_30
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28902..29582
DNA (681bp) protein (227aa)
hypothetical protein Tax=Xanthomonadaceae RepID=UPI000299D131
Uncharacterized protein {ECO:0000313|EMBL:EYR70185.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein
Displaying items 1-30 of 79 in total

View Taxonomy