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Ig9238_scaffold_94854

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Displaying items 1-30 of 66 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig9238_scaffold_94854_1
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(202..813)
DNA (612bp) protein (204aa)
lysogenization protein HflD Tax=Arenimonas oryziterrae RepID=UPI0003B6D6F0
High frequency lysogenization protein HflD homolog {ECO:0000256|HAMAP-Rule:MF_00695}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
putative lysogenization regulator
Ig9238_scaffold_94854_2
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(986..2104)
DNA (1119bp) protein (373aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
thiouridylase Tax=Arenimonas oryziterrae RepID=UPI0003B41380
tRNA 2-thiouridylase
Ig9238_scaffold_94854_3
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2101..2613)
DNA (513bp) protein (171aa)
nudix hydrolase family protein (EC:3.6.-.-)
7,8-dihydro-8-oxoguanine-triphosphatase Tax=Xanthomonas sp. M97 RepID=UPI00039BA476
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
Ig9238_scaffold_94854_4
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2698..3024
DNA (327bp) protein (109aa)
ATP-dependent Clp protease ClpS Tax=Arenimonas oryziterrae RepID=UPI0003B6F3F7
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
clpS; Clp protease ClpS
Ig9238_scaffold_94854_5
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3103..5385
DNA (2283bp) protein (761aa)
ATP-dependent Clp protease ATP-binding protein {ECO:0000313|EMBL:KFN46949.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
ATP-dependent Clp protease subunit bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas spadix genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
ATP-dependent Clp protease ATP-binding subunit clpA
Ig9238_scaffold_94854_6
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5622..5840)
DNA (219bp) protein (73aa)
translation initiation factor IF-1 Tax=Arenimonas oryziterrae RepID=UPI0003B5B20C
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
translation initiation factor IF-1
Ig9238_scaffold_94854_7
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6192..6920)
DNA (729bp) protein (243aa)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
Leucyl/phenylalanyl-tRNA--protein transferase bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
aat; probable leucyl/phenylalanyl-tRNA-protein transferase
Ig9238_scaffold_94854_8
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6917..8062)
DNA (1146bp) protein (382aa)
hypothetical protein Tax=Arenimonas oryziterrae RepID=UPI0003B6FDCF
Uncharacterized protein {ECO:0000313|EMBL:KFN46952.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
hypothetical protein
Ig9238_scaffold_94854_9
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8303..8941
DNA (639bp) protein (213aa)
response regulator Tax=Xanthomonas arboricola RepID=UPI00030E7F7E
Uncharacterized protein {ECO:0000313|EMBL:GAE56501.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni MAFF 301420.;"
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
Ig9238_scaffold_94854_10
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9010..12258)
DNA (3249bp) protein (1083aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
Ribonuclease E Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WTQ4_PSEUU
ribonuclease, Rne/Rng family
Ig9238_scaffold_94854_11
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12654..13634
DNA (981bp) protein (327aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
23S rRNA pseudouridylate synthase C Tax=Xanthomonas sacchari RepID=UPI000263035F
23S rRNA pseudouridylate synthase
Ig9238_scaffold_94854_12
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13746..14096)
DNA (351bp) protein (117aa)
phhB; pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000256|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000256|HAMAP-Rule:MF_00434, ECO:0000313|EMBL:CEM58239.1};; 4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Pterin carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris.;"
Putative pterin-4-alpha-carbinolamine dehydratase Tax=Xanthomonas campestris pv. campestris (strain B100) RepID=PHS_XANCB
Ig9238_scaffold_94854_13
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14266..14856
DNA (591bp) protein (197aa)
Fe/S biogenesis protein NfuA Tax=Arenimonas oryziterrae RepID=UPI0003B6439A
HesB/YadR/YfhF-family protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
Ig9238_scaffold_94854_14
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14953..15795
DNA (843bp) protein (281aa)
hypothetical protein Tax=Arenimonas oryziterrae RepID=UPI0003B72033
Uncharacterized protein {ECO:0000313|EMBL:KFN45292.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
Ig9238_scaffold_94854_15
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15810..16166)
DNA (357bp) protein (119aa)
Cytochrome c553 bin=GWF1_Xanthomonadales_69_6 species=Rhodanobacter fulvus genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
cytochrome c553
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
Ig9238_scaffold_94854_16
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16163..16492)
DNA (330bp) protein (110aa)
NODE_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96119.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
Cytochrome c553 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
cytochrome C
Ig9238_scaffold_94854_17
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16815..17957
DNA (1143bp) protein (381aa)
hemolysin D Tax=Arenimonas oryziterrae RepID=UPI0003B78A6A
czcB; cation efflux system protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_94854_18
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17954..21364
DNA (3411bp) protein (1137aa)
transporter Tax=Arenimonas oryziterrae RepID=UPI0003B66A16
Uncharacterized protein {ECO:0000313|EMBL:KFN46975.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
transporter
Ig9238_scaffold_94854_19
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21361..24441
DNA (3081bp) protein (1027aa)
RND transporter, HAE1/HME family, permease protein bin=GWF1_Xanthomonadales_69_6 species=unknown genus=unknown taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
mdtC; RND superfamily multidrug resistance protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_94854_20
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24464..25681)
DNA (1218bp) protein (406aa)
Uncharacterized protein {ECO:0000313|EMBL:KFN46977.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
TraB family protein bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
TraB family protein
Ig9238_scaffold_94854_21
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25811..29254)
DNA (3444bp) protein (1148aa)
Uncharacterized protein {ECO:0000313|EMBL:KFN45905.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
MscS Mechanosensitive ion channel bin=GWF1_Xanthomonadales_69_6 species=Nitrosomonas sp. genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
mechanosensitive ion channel MscS
Ig9238_scaffold_94854_22
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29254..30141)
DNA (888bp) protein (296aa)
Apolipoprotein acyltransferase {ECO:0000313|EMBL:KFN52339.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
N-carbamoylputrescine amidase bin=GWF1_Xanthomonadales_69_6 species=unknown genus=unknown taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
carbon-nitrogen hydrolase family protein
Ig9238_scaffold_94854_23
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30370..31407)
DNA (1038bp) protein (346aa)
Agmatine deiminase {ECO:0000313|EMBL:KFL37966.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
Agmatine deiminase bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
peptidylarginine deiminase-like protein
Ig9238_scaffold_94854_24
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31435..31764)
DNA (330bp) protein (110aa)
Putative uncharacterized protein Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WSL4_PSEUU
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
Ig9238_scaffold_94854_25
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32082..32207)
DNA (126bp) protein (42aa)
50S ribosomal protein L36 Tax=Xanthomonadaceae RepID=RL36_XANAC
rpmJ; 50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri subsp. citri.;"
Ig9238_scaffold_94854_26
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32488..33372
DNA (885bp) protein (295aa)
hypothetical protein Tax=Arenimonas oryziterrae RepID=UPI0003B3FA3B
hypothetical protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_94854_27
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33383..34270
DNA (888bp) protein (296aa)
hypothetical protein Tax=Arenimonas oryziterrae RepID=UPI0003B41D9B
exported GumN protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_94854_28
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34284..35207
DNA (924bp) protein (308aa)
2-hydroxyacid dehydrogenase (EC:1.-.-.-)
2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:ACJ00758.1}; EC=1.-.-.- {ECO:0000313|EMBL:ACJ00758.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
2-hydroxyacid dehydrogenase Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IWT4_RHOCS
Ig9238_scaffold_94854_29
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35209..35763)
DNA (555bp) protein (185aa)
Electron transport complex protein RnfB Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q603B3_METCA
electron transport complex protein RnfB
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_94854_30
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35765..36346)
DNA (582bp) protein (194aa)
Electron transport complex protein RnfA Tax=Aliivibrio salmonicida (strain LFI1238) RepID=RNFA_ALISL
rnfA; Na(+)-translocating NADH-quinone reductase subunit E
Tax=BJP_08E140C01_Xanthomonadales_64_42
Displaying items 1-30 of 66 in total

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