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Ig9238_scaffold_34143

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Displaying items 1-30 of 450 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig9238_scaffold_34143_1
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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307..3057
DNA (2751bp) protein (917aa)
acnA; aconitate hydratase (EC:4.2.1.3)
aconitate hydratase Tax=Xanthomonas sp. SHU199 RepID=UPI00036BE331
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_34143_2
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3161..3547)
DNA (387bp) protein (129aa)
Uncharacterized protein Tax=Xanthomonas RepID=Q8PLC1_XANAC
SnoaL-like domain
Uncharacterized protein {ECO:0000313|EMBL:KHS07266.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. phaseoli.;"
Ig9238_scaffold_34143_3
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3708..5387
DNA (1680bp) protein (560aa)
Long-chain fatty acid--CoA ligase {ECO:0000313|EMBL:KFL38000.1}; EC=6.2.1.3 {ECO:0000313|EMBL:KFL38000.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
long-chain fatty acid--CoA ligase Tax=Arenimonas oryziterrae RepID=UPI0003B38AFE
AMP-dependent synthetase and ligase
Ig9238_scaffold_34143_4
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5582..6484
DNA (903bp) protein (301aa)
RpfF Tax=Stenotrophomonas maltophilia RepID=Q19VG8_STEMA
rpfF; enoyl-CoA hydratase
Putative enoyl CoA hydratase, regulation of pathogenicity factors protein {ECO:0000313|EMBL:CAQ45732.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
Ig9238_scaffold_34143_5
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6513..8645)
DNA (2133bp) protein (711aa)
Uncharacterized protein {ECO:0000313|EMBL:KFN50004.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
Sensory/regulatory protein RpfC bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
rpfC; hybrid sensory histidine kinase/regulatory protein RpfC
Ig9238_scaffold_34143_6
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8629..9723)
DNA (1095bp) protein (365aa)
Cyclic di-GMP phosphodiesterase response regulator RpfG bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
response regulator receiver modulated metal dependent phosphohydrolase
Tax=GWF1_Xanthomonadales_69_6_curated
Ig9238_scaffold_34143_7
unknown

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comp(9917..10216)
DNA (300bp) protein (100aa)

This feature has no annotations

Ig9238_scaffold_34143_8
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10323..11846)
DNA (1524bp) protein (508aa)
lysyl-tRNA synthetase Tax=Pseudoxanthomonas sp. GW2 RepID=UPI00030A49E0
lysyl-tRNA synthetase
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_34143_9
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(11994..12851)
DNA (858bp) protein (286aa)
peptide chain release factor 2 Tax=Xanthomonas RepID=UPI000263047D
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452, ECO:0000313|EMBL:KIJ71070.1}; species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
peptide chain release factor 2
Ig9238_scaffold_34143_10
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13227..14951)
DNA (1725bp) protein (575aa)
ssDNA exonuclease RecJ Tax=Arenimonas oryziterrae RepID=UPI0003B641D2
Uncharacterized protein {ECO:0000313|EMBL:KFN50000.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
single-stranded-DNA-specific exonuclease RecJ
Ig9238_scaffold_34143_11
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15086..16039)
DNA (954bp) protein (318aa)
regulatory protein Tax=Arenimonas oryziterrae RepID=UPI0003B3DEE3
Uncharacterized protein {ECO:0000313|EMBL:KFN44511.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
rpfE; regulatory protein RpfE
Ig9238_scaffold_34143_12
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16213..16689)
DNA (477bp) protein (159aa)
Transcription elongation factor GreA bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
transcription elongation factor GreA
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
Ig9238_scaffold_34143_13
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

17083..18990
DNA (1908bp) protein (636aa)
TonB-dependent receptor Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZVA3_OPITP
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ACB76770.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Ig9238_scaffold_34143_14
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19036..22305)
DNA (3270bp) protein (1090aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
Carbamoyl-phosphate synthase large chain Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WTV8_PSEUU
carbamoyl-phosphate synthase, large subunit
Ig9238_scaffold_34143_15
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22370..24289)
DNA (1920bp) protein (640aa)
Prolyl oligopeptidase Tax=Gallaecimonas xiamenensis 3-C-1 RepID=K2ITY0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KFN49996.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
peptidase S9, prolyl oligopeptidase active site region
Ig9238_scaffold_34143_16
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24309..25430)
DNA (1122bp) protein (374aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
carbamoyl phosphate synthase small subunit Tax=Arenimonas oryziterrae RepID=UPI0003B3024B
carbamoyl-phosphate synthase, small subunit
Ig9238_scaffold_34143_17
Halomonas sp. TD01, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25621..26271)
DNA (651bp) protein (217aa)
Methyltransferase type 12 Tax=Halomonas sp. TD01 RepID=F7SHW6_9GAMM
Methyltransferase type 12 {ECO:0000313|EMBL:EGP21592.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. TD01.;"
hypothetical protein
Ig9238_scaffold_34143_18
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26300..27028)
DNA (729bp) protein (243aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
dapB; dihydrodipicolinate reductase (dhpr) protein (EC:1.3.1.26)
dihydrodipicolinate reductase Tax=Xanthomonas sacchari RepID=UPI0002630485
Ig9238_scaffold_34143_19
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27057..27497)
DNA (441bp) protein (147aa)
translation initiation factor IF-3 Tax=Arenimonas oryziterrae RepID=UPI0003B7A138
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
translation initiation factor IF-3
Ig9238_scaffold_34143_20
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27638..29542)
DNA (1905bp) protein (635aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
Threonine--tRNA ligase bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
threonyl-tRNA synthetase
Ig9238_scaffold_34143_trna_2
unknown

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comp(29842..29913)
DNA (72bp)
transferRNA Val
Ig9238_scaffold_34143_21
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30243..31217
DNA (975bp) protein (325aa)
PhoH family protein bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
PhoH-like ATP-binding protein
Tax=GWF1_Xanthomonadales_69_6_curated
Ig9238_scaffold_34143_22
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31217..31699
DNA (483bp) protein (161aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
Probable rRNA maturation factor bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
hypothetical protein
Ig9238_scaffold_34143_23
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31943..32806
DNA (864bp) protein (288aa)
magnesium transporter Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002F3EF35
Magnesium transporter {ECO:0000313|EMBL:KGO99507.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
CBS domain containing protein
Ig9238_scaffold_34143_24
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32811..34022
DNA (1212bp) protein (404aa)
Putative transmembrane protein bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
transmembrane protein
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
Ig9238_scaffold_34143_25
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34075..35013
DNA (939bp) protein (313aa)
putative secreted peptidyl prolyl cis-trans isomerase, cyclophilin type protein (EC:5.2.1.8)
peptidylprolyl isomerase Tax=Arenimonas oryziterrae RepID=UPI0003B54258
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
Ig9238_scaffold_34143_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35124..35567
DNA (444bp) protein (148aa)
Putative Fe-S oxidoreductase Tax=Rhodanobacter denitrificans RepID=I4WWR1_9GAMM
putative Fe-S oxidoreductase
Putative Fe-S oxidoreductase {ECO:0000313|EMBL:AGG89519.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Ig9238_scaffold_34143_27
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35476..36117)
DNA (642bp) protein (214aa)
Putative uncharacterized protein bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=Jannaschia taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
hypothetical protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_34143_28
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36161..38548)
DNA (2388bp) protein (796aa)
hypothetical protein Tax=Massilia niastensis RepID=UPI00036C42C3
tonB-dependent Receptor Plug domain protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_34143_29
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39015..39233
DNA (219bp) protein (73aa)
Uncharacterized protein Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HQG1_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL95248.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
Displaying items 1-30 of 450 in total

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