ggKbase home page

Ig9238_scaffold_174054

Search features with annotation key words

Displaying items 1-30 of 72 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig9238_scaffold_174054_1
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(540..2042)
DNA (1503bp) protein (501aa)
ornithine/acetylornithine aminotransferase (EC:2.6.1.36)
lysine 6-aminotransferase Tax=Arenimonas oryziterrae RepID=UPI0003B4C2EA
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
Ig9238_scaffold_174054_2
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

2215..2496
DNA (282bp) protein (94aa)
hypothetical protein Tax=Zavarzinella formosa RepID=UPI0003024654
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV61956.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
Ig9238_scaffold_174054_3
Bacillus sp. OxB-1, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2493..3218
DNA (726bp) protein (242aa)
Short-chain dehydrogenase/reductase SDR Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9Z2P8_9NEIS
short-chain dehydrogenase/reductase family oxidoreductase
Short-chain dehydrogenase/reductase family oxidoreductase {ECO:0000313|EMBL:BAQ11813.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. (strain OxB-1).;"
Ig9238_scaffold_174054_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3247..4527)
DNA (1281bp) protein (427aa)
Osmotically inducible protein C (Fragment) Tax=Cupriavidus sp. HPC(L) RepID=V2IAG0_9BURK
Conserved protein of unknown function. Containing OsmC domain
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
Ig9238_scaffold_174054_5
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4659..5681
DNA (1023bp) protein (341aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
S-adenosylmethionine tRNA ribosyltransferase Tax=Xanthomonas sp. SHU199 RepID=UPI0003609565
S-adenosylmethionine:tRNA ribosyltransferase-isomerase
Ig9238_scaffold_174054_6
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6033..7169
DNA (1137bp) protein (379aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29)
queuine tRNA-ribosyltransferase Tax=Stenotrophomonas maltophilia RepID=UPI0002E7524B
Ig9238_scaffold_174054_7
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7443..7778
DNA (336bp) protein (112aa)
preprotein translocase subunit YajC Tax=Arenimonas oryziterrae RepID=UPI0003B58314
yajC; preprotein translocase subunit YajC
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
Ig9238_scaffold_174054_8
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7836..9707
DNA (1872bp) protein (624aa)
preprotein translocase subunit SecD Tax=Arenimonas oryziterrae RepID=UPI0003B57DB8
protein-export membrane protein SecD
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_174054_9
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9725..10705
DNA (981bp) protein (327aa)
preprotein translocase subunit SecF Tax=Arenimonas oryziterrae RepID=UPI0003B3D529
preprotein translocase subunit SecF
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_174054_10
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10723..11532)
DNA (810bp) protein (270aa)
Probable inositol monophosphatase protein bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
inositol monophosphatase
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
Ig9238_scaffold_174054_11
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11662..12432
DNA (771bp) protein (257aa)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
tRNA/rRNA methyltransferase bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas spadix genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
tRNA/rRNA methyltransferase
Ig9238_scaffold_174054_12
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12559..13464
DNA (906bp) protein (302aa)
Anion binding protein Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UQU7_PSEUP
anion binding protein
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
Ig9238_scaffold_174054_13
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13461..15590
DNA (2130bp) protein (710aa)
Diguanylate cyclase/phosphodiesterase Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UQU8_PSEUP
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:KGQ18524.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
diguanylate cyclase/phosphodiesterase
Ig9238_scaffold_174054_14
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15682..16287)
DNA (606bp) protein (202aa)
Membrane protein {ECO:0000313|EMBL:KGO98940.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
Uncharacterized ABC-type transport system, permease component bin=GWF1_Xanthomonadales_69_6 species=Xanthomonas vesicatoria genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
Exopolysaccharide synthesis ExoD
Ig9238_scaffold_174054_15
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16583..17581
DNA (999bp) protein (333aa)
Phosphate transport system substrate-binding protein Tax=uncultured beta proteobacterium RepID=H5SNZ8_9PROT
pstS; phosphate ABC transporter substrate-binding protein
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
Ig9238_scaffold_174054_16
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17628..18578
DNA (951bp) protein (317aa)
Phosphate ABC transporter, inner membrane subunit PstC Tax=Methylovorus sp. (strain SIP3-4) RepID=C6X6V9_METSD
phosphate ABC transporter permease
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
Ig9238_scaffold_174054_17
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18580..19500
DNA (921bp) protein (307aa)
phosphate ABC transporter permease Tax=Caldimonas manganoxidans RepID=UPI00037030C5
phosphate ABC transporter, permease protein PstA
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_174054_18
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19505..20281
DNA (777bp) protein (259aa)
Phosphate ABC transporter, ATPase subunit Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RM49_ACCPU
phosphate ABC transporter ATPase
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_174054_19
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20308..21039
DNA (732bp) protein (244aa)
Uncharacterized protein Tax=Amphimedon queenslandica RepID=I1F0R8_AMPQE
phosphate uptake regulator PhoU
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_174054_20
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21099..21506)
DNA (408bp) protein (136aa)
hypothetical protein Tax=Arenimonas oryziterrae RepID=UPI0003B56906
hypothetical protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_174054_21
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21571..21927
DNA (357bp) protein (119aa)
methylated-DNA--protein-cysteine methyltransferase Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000314FC83
Uncharacterized protein {ECO:0000313|EMBL:KFN49242.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding protein
Ig9238_scaffold_174054_22
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21999..22679
DNA (681bp) protein (227aa)
Rhomboid family protein Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WUJ9_PSEUU
rhomboid family protein
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
Ig9238_scaffold_174054_23
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22724..25579)
DNA (2856bp) protein (952aa)
RNA polymerase-associated protein RapA {ECO:0000256|SAAS:SAAS00017181}; EC=3.6.4.- {ECO:0000256|SAAS:SAAS00017178};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
SNF2-related protein bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
helicase SNF2
Ig9238_scaffold_174054_24
unknown

Not on your lists

comp(25583..25933)
DNA (351bp) protein (117aa)

This feature has no annotations

Ig9238_scaffold_174054_25
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26684..27622
DNA (939bp) protein (313aa)
Uncharacterized protein Tax=Spirochaeta africana (strain ATCC 700263 / DSM 8902 / Z-7692) RepID=H9ULC2_SPIAZ
dehydrogenase
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
Ig9238_scaffold_174054_26
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27655..28644
DNA (990bp) protein (330aa)
3-oxoacyl-(Acyl-carrier-protein) synthase III Tax=Spirochaeta africana (strain ATCC 700263 / DSM 8902 / Z-7692) RepID=H9ULC3_SPIAZ
3-oxoacyl-(acyl-carrier-protein) synthase III
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_174054_27
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28913..29503
DNA (591bp) protein (197aa)
3-hydroxymyristoyl/3-hydroxydecanoyl-(Acyl carrier protein) dehydratase Tax=Spirochaeta africana (strain ATCC 700263 / DSM 8902 / Z-7692) RepID=H9ULC4_SPIAZ
(3R)-hydroxymyristoyl-ACP dehydratase
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_174054_28
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29500..29952
DNA (453bp) protein (151aa)
3-hydroxymyristoyl/3-hydroxydecanoyl-(Acyl carrier protein) dehydratase Tax=Spirochaeta africana (strain ATCC 700263 / DSM 8902 / Z-7692) RepID=H9ULC5_SPIAZ
(3R)-hydroxymyristoyl-ACP dehydratase
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
Ig9238_scaffold_174054_29
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29942..31213
DNA (1272bp) protein (424aa)
3-oxoacyl-(Acyl-carrier-protein) synthase Tax=Spirochaeta africana (strain ATCC 700263 / DSM 8902 / Z-7692) RepID=H9ULC6_SPIAZ
3-oxoacyl-ACP synthase
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
Ig9238_scaffold_174054_30
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31281..31529
DNA (249bp) protein (83aa)
Acyl carrier protein Tax=Leptonema illini DSM 21528 RepID=H2CG53_9LEPT
acyl carrier protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
Displaying items 1-30 of 72 in total

View Taxonomy