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JSantini_Fe4_scaffold_6

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Displaying items 91-120 of 197 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_Fe4_scaffold_6_trna_5
unknown

Not on your lists

comp(89167..89239)
DNA (73bp)
transferRNA His
JSantini_Fe4_scaffold_6_90
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(89302..90249)
DNA (948bp) protein (316aa)
prsA; ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase n=4 Tax=root RepID=B5ENU3_ACIF5
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_6_trna_4
unknown

Not on your lists

comp(90301..90372)
DNA (72bp)
transferRNA Gln
JSantini_Fe4_scaffold_6_91
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(90377..91222)
DNA (846bp) protein (282aa)
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=3 Tax=Acidithiobacillus RepID=B5ENU2_ACIF5
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_6_92
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(91219..91857)
DNA (639bp) protein (213aa)
outer membrane lipoprotein LolB
Outer membrane lipoprotein LolB n=3 Tax=Acidithiobacillus RepID=B5ENU1_ACIF5
Outer-membrane lipoprotein LolB {ECO:0000256|SAAS:SAAS00002103}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_6_93

Not on your lists

comp(91872..93533)
DNA (1662bp) protein (554aa)
hypothetical protein
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QGG3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI06322.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_6_94

Not on your lists

93768..94919
DNA (1152bp) protein (384aa)
hemA; glutamyl-tRNA reductase (EC:1.2.1.-)
Glutamyl tRNA reductase n=1 Tax=mine drainage metagenome RepID=E6QGG4_9ZZZZ
Glutamyl tRNA reductase {ECO:0000313|EMBL:CBI06323.1}; EC=1.2.1.- {ECO:0000313|EMBL:CBI06323.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_6_95

Not on your lists

94916..96013
DNA (1098bp) protein (366aa)
prfA; peptide chain release factor 1
Peptide chain release factor 1 (RF-1) n=1 Tax=mine drainage metagenome RepID=E6QGG5_9ZZZZ
Peptide chain release factor 1 (RF-1) {ECO:0000313|EMBL:CBI06324.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_6_96

Not on your lists

96003..96869
DNA (867bp) protein (289aa)
HemK family modification methylase
Protein methyltransferase HemK (Protein-glutamine N-methyltransferase hemK) (Protein-(Glutamine-N5) MTase hemK) n=1 Tax=mine drainage metagenome RepID=E6QGG6_9ZZZZ
Protein methyltransferase HemK (Protein-glutamine N-methyltransferase hemK) (Protein-(Glutamine-N5) MTase hemK) {ECO:0000313|EMBL:CBI06325.1}; EC=2.1.1.- {ECO:0000313|EMBL:CBI06325.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_6_97

Not on your lists

96872..97684
DNA (813bp) protein (271aa)
mutM; formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase n=1 Tax=mine drainage metagenome RepID=E6QGG7_9ZZZZ
Formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase {ECO:0000313|EMBL:CBI06326.1}; EC=3.2.2.23 {ECO:0000313|EMBL:CBI06326.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_6_98

Not on your lists

97701..99680
DNA (1980bp) protein (660aa)
hypothetical protein
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QGG8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI06327.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_6_99

Not on your lists

comp(99664..99915)
DNA (252bp) protein (84aa)
iron-sulfur cluster-binding protein
Ferredoxin n=1 Tax=mine drainage metagenome RepID=E6QGG9_9ZZZZ
Ferredoxin {ECO:0000313|EMBL:CBI06328.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_6_100
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(99944..100468)
DNA (525bp) protein (175aa)
coaD; pantetheine-phosphate adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase n=3 Tax=root RepID=B5ENT3_ACIF5
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_6_101
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(100455..101030)
DNA (576bp) protein (192aa)
methyltransferase
Methyltransferase n=4 Tax=root RepID=B5ENT2_ACIF5
Ribosomal RNA small subunit methyltransferase D {ECO:0000256|PIRNR:PIRNR004553}; EC=2.1.1.171 {ECO:0000256|PIRNR:PIRNR004553};; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_6_102
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

101153..102184
DNA (1032bp) protein (344aa)
signal recognition particle-docking protein FtsY
Signal recognition particle receptor FtsY n=2 Tax=Acidithiobacillus RepID=B5ENT1_ACIF5
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_6_103
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

102181..102852
DNA (672bp) protein (224aa)
ftsE; cell division ATP-binding protein FtsE
Cell division ATP-binding protein FtsE n=4 Tax=root RepID=B5ENT0_ACIF5
Cell division ATP-binding protein FtsE {ECO:0000313|EMBL:EGQ63773.1}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
JSantini_Fe4_scaffold_6_104
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

102849..103754
DNA (906bp) protein (302aa)
cell division protein FtsX
Cell division protein FtsX n=3 Tax=Acidithiobacillus RepID=B5ENS9_ACIF5
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_6_105

Not on your lists

103898..104758
DNA (861bp) protein (287aa)
rpoH; RNA polymerase sigma-32 factor
RNA polymerase, sigma 32 (Sigma H) factor n=1 Tax=mine drainage metagenome RepID=E6QGC9_9ZZZZ
RNA polymerase, sigma 32 (Sigma H) factor {ECO:0000313|EMBL:CBI06286.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_6_106
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

104755..105087
DNA (333bp) protein (111aa)
hypothetical protein
Uncharacterized protein n=4 Tax=root RepID=E6QGD0_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:ACH84570.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_6_107

Not on your lists

comp(105111..106433)
DNA (1323bp) protein (441aa)
hslU; heat shock protein HslVU, ATPase subunit HslU
ATP-dependent protease ATPase subunit HslU n=4 Tax=root RepID=HSLU_ACIF2
ATP-dependent hsl protease ATP-binding subunit hslU (Heat shock protein hslU) {ECO:0000313|EMBL:CBI06288.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_6_108
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(106436..106975)
DNA (540bp) protein (180aa)
ATP-dependent protease peptidase subunit
ATP-dependent protease subunit HslV n=3 Tax=Acidithiobacillus RepID=B5ENS5_ACIF5
ATP-dependent protease subunit HslV {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019556}; EC=3.4.25.2 {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019493};; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_6_109

Not on your lists

comp(106972..107919)
DNA (948bp) protein (316aa)
xerC; tyrosine recombinase XerC
Site-specific tyrosine recombinase n=1 Tax=mine drainage metagenome RepID=E6QGD3_9ZZZZ
Site-specific tyrosine recombinase {ECO:0000313|EMBL:CBI06290.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_6_110

Not on your lists

comp(107913..108596)
DNA (684bp) protein (228aa)
hypothetical protein
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QGD4_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI06291.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_6_111
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(108597..108773)
DNA (177bp) protein (59aa)
hypothetical protein
Putative uncharacterized protein n=3 Tax=Acidithiobacillus RepID=B7J8H3_ACIF2
Uncharacterized protein {ECO:0000313|EMBL:ACH84565.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_6_112
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(108775..109668)
DNA (894bp) protein (298aa)
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=2 Tax=Acidithiobacillus RepID=B5ENS1_ACIF5
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
JSantini_Fe4_scaffold_6_trna_3
unknown

Not on your lists

comp(109729..109799)
DNA (71bp)
transferRNA Gln
JSantini_Fe4_scaffold_6_113
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

109987..111183
DNA (1197bp) protein (399aa)
omp40; major outer membrane protein 40
Phosphate-selective porin O and P n=5 Tax=Acidithiobacillus RepID=B5ENS0_ACIF5
Major outer membrane protein 40 {ECO:0000313|EMBL:ACK78354.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_6_114
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

111340..113157
DNA (1818bp) protein (606aa)
typA; GTP-binding protein TypA
GTP-binding protein TypA n=1 Tax=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) RepID=B7J8H0_ACIF2
GTP-binding protein TypA {ECO:0000313|EMBL:ACK78703.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_6_115
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113225..113830)
DNA (606bp) protein (202aa)
phosphatidylethanolamine N-methyltransferase
Methyltransferase type 11 n=3 Tax=Acidithiobacillus RepID=B5ENR8_ACIF5
Methyltransferase type 11 {ECO:0000313|EMBL:ACH84561.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_6_116
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113827..114210)
DNA (384bp) protein (128aa)
apaG protein
Protein ApaG n=3 Tax=Acidithiobacillus RepID=APAG_ACIF2
Protein ApaG {ECO:0000256|HAMAP-Rule:MF_00791, ECO:0000256|SAAS:SAAS00014786}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
Displaying items 91-120 of 197 in total

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