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JSantini_Fe4_scaffold_6

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Displaying items 1-30 of 197 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_Fe4_scaffold_6_1
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..1035
DNA (1035bp) protein (345aa)
ntrC; nitrogen regulation protein NR(I)
Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPH2_ACIF5
Nitrogen regulation protein NR(I) {ECO:0000313|EMBL:ACK79802.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_6_2
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1104..2081
DNA (978bp) protein (326aa)
hypothetical protein
Unidentified ORF; NCBI gi: 310878 n=4 Tax=Acidithiobacillus RepID=Q56292_ACIFR
Uncharacterized protein {ECO:0000313|EMBL:ACK79300.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_6_3
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2190..3158
DNA (969bp) protein (323aa)
ispB; octaprenyl-diphosphate synthase (EC:2.5.1.-)
Polyprenyl synthetase n=3 Tax=Acidithiobacillus RepID=B5EPH0_ACIF5
Polyprenyl synthetase {ECO:0000313|EMBL:ACH84711.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_6_trna_1
unknown

Not on your lists

3169..3242
DNA (74bp)
transferRNA Pro
JSantini_Fe4_scaffold_6_4
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3562..5622
DNA (2061bp) protein (687aa)
O-antigen polymerase family protein
O-antigen polymerase n=3 Tax=Acidithiobacillus RepID=B5EPG9_ACIF5
O-antigen polymerase family protein {ECO:0000313|EMBL:ACK78953.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_6_5
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5771..7525
DNA (1755bp) protein (585aa)
peptidoglycan synthetase FtsI
Peptidoglycan glycosyltransferase n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPG8_ACIF5
Peptidoglycan synthetase FtsI , putative {ECO:0000313|EMBL:ACK80935.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_6_6
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7522..7833
DNA (312bp) protein (104aa)
hypothetical protein
Uncharacterized protein n=3 Tax=root RepID=E6QET1_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:ACH84708.1}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_6_7
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7775..8149
DNA (375bp) protein (125aa)
hypothetical protein
Uncharacterized protein n=3 Tax=root RepID=E6QET0_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:ACH84707.1}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_6_8

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comp(8146..10008)
DNA (1863bp) protein (621aa)
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein Uup n=1 Tax=mine drainage metagenome RepID=E6QES9_9ZZZZ
ABC transporter ATP-binding protein Uup {ECO:0000313|EMBL:CBI05705.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_6_9

Not on your lists

comp(10105..10455)
DNA (351bp) protein (117aa)
hypothetical protein
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QES8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI05704.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_6_10
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10632..11573
DNA (942bp) protein (314aa)
uracil-DNA glycosylase (EC:3.2.2.-)
Phage SPO1 DNA polymerase-related protein n=3 Tax=Acidithiobacillus PF5_ACIF5">RepID=B5EPF5_ACIF5
Uracil-DNA glycosylase family 4 protein {ECO:0000313|EMBL:ACK79971.1}; EC=3.2.2.- {ECO:0000313|EMBL:ACK79971.1};; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_6_11
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11636..12343)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SND3_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAP75973.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius nubinhibens ISM.;"
JSantini_Fe4_scaffold_6_12
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12403..13380)
DNA (978bp) protein (326aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FB2
Uncharacterized protein {ECO:0000313|EMBL:CDQ10825.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe4_scaffold_6_13
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13415..14671)
DNA (1257bp) protein (419aa)
putative secreted protein
chinitase domain-containing protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FAE
Uncharacterized protein {ECO:0000313|EMBL:CDQ10823.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe4_scaffold_6_14
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14726..15658)
DNA (933bp) protein (311aa)
TadE family protein
TadE family protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JRZ3_9GAMM
TadE family protein {ECO:0000313|EMBL:CDQ10822.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe4_scaffold_6_15
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15648..17393)
DNA (1746bp) protein (582aa)
type II secretion system protein E
Type II secretion system protein E n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JRZ4_9GAMM
Type II secretion system protein E {ECO:0000313|EMBL:AEM46502.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe4_scaffold_6_16
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17404..18759)
DNA (1356bp) protein (452aa)
type II and III secretion system protein
Type II and III secretion system protein n=2 Tax=root RepID=G0JRZ5_9GAMM
Type II and III secretion system protein {ECO:0000313|EMBL:AEM46503.1}; Flags: Precursor;; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe4_scaffold_6_17
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18775..19821)
DNA (1047bp) protein (349aa)
Flp pilus assembly protein CpaB
Flp pilus assembly protein CpaB n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JRZ6_9GAMM
Flp pilus assembly protein CpaB {ECO:0000313|EMBL:CDQ10819.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe4_scaffold_6_18
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19830..19997)
DNA (168bp) protein (56aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624F63
Putative uncharacterized protein {ECO:0000313|EMBL:AEM46505.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe4_scaffold_6_19
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20007..20681)
DNA (675bp) protein (225aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JRZ8_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:AEM46506.1}; Flags: Precursor;; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe4_scaffold_6_20
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20678..21490)
DNA (813bp) protein (271aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JRZ9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:CDQ10816.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe4_scaffold_6_21
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21500..22408)
DNA (909bp) protein (303aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JS00_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:AEM46508.1}; Flags: Precursor;; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe4_scaffold_6_22
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22423..24033)
DNA (1611bp) protein (537aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624F66
Putative uncharacterized protein {ECO:0000313|EMBL:AEM46509.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe4_scaffold_6_23
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24128..24406)
DNA (279bp) protein (93aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JS02_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:AEM46510.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe4_scaffold_6_24
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24792..25934)
DNA (1143bp) protein (381aa)
OmpA/MotB domain-containing protein
OmpA/MotB domain protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JS03_9GAMM
OmpA/MotB domain protein {ECO:0000313|EMBL:AEM46511.1}; Flags: Precursor;; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe4_scaffold_6_25
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25940..26629)
DNA (690bp) protein (230aa)
regulatory protein LuxR
Regulatory protein LuxR n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JS04_9GAMM
Regulatory protein LuxR {ECO:0000313|EMBL:AEM46512.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe4_scaffold_6_26
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26961..27812
DNA (852bp) protein (284aa)
type II secretion system F domain-containing protein
Type II secretion system F domain-containing protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JS05_9GAMM
Type II secretion system F domain-containing protein {ECO:0000313|EMBL:CDQ10810.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe4_scaffold_6_27
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27809..28690
DNA (882bp) protein (294aa)
type II secretion system F domain-containing protein
Type II secretion system F domain-containing protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JS06_9GAMM
Type II secretion system F domain-containing protein {ECO:0000313|EMBL:CDQ10809.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe4_scaffold_6_28
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28744..29049
DNA (306bp) protein (102aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) RepID=B7J965_ACIF2
Uncharacterized protein {ECO:0000313|EMBL:ACK78554.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_6_29

Not on your lists

29364..29873
DNA (510bp) protein (170aa)
hypothetical protein
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QFW6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI06112.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Displaying items 1-30 of 197 in total

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