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JSantini_Fe4_scaffold_15

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Displaying items 1-30 of 165 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_Fe4_scaffold_15_1

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comp(1..144)
DNA (144bp) protein (48aa)
hypothetical protein
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QDN8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI03462.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_15_2
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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775..1260
DNA (486bp) protein (162aa)
hypothetical protein
Uncharacterized protein n=3 Tax=root RepID=E6Q8D8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:ACH84905.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_15_3
unknown

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comp(1377..1616)
DNA (240bp) protein (80aa)

This feature has no annotations

JSantini_Fe4_scaffold_15_4
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1641..1967)
DNA (327bp) protein (109aa)
hypothetical protein
Putative uncharacterized protein n=3 Tax=Acidithiobacillus RepID=B5EL58_ACIF5
Uncharacterized protein {ECO:0000313|EMBL:ACH82574.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_15_5

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comp(2183..2977)
DNA (795bp) protein (265aa)
transferase
Putative Spermidine synthase (Modular protein) n=1 Tax=mine drainage metagenome RepID=E6QCW1_9ZZZZ
Putative Spermidine synthase (Modular protein) {ECO:0000313|EMBL:CBI05037.1}; EC=2.5.1.16 {ECO:0000313|EMBL:CBI05037.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_15_6
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3039..3437)
DNA (399bp) protein (133aa)
rhodanese-like domain-containing protein
Rhodanese domain protein n=3 Tax=root RepID=B5EL60_ACIF5
Rhodanese-like domain protein {ECO:0000313|EMBL:ACK78122.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_15_7

Not on your lists

comp(3468..3851)
DNA (384bp) protein (128aa)
hypothetical protein
Uncharacterized protein n=4 Tax=root RepID=E6QCV8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI05034.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_15_8
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4040..4732
DNA (693bp) protein (231aa)
integral membrane protein
Integral membrane protein n=4 Tax=Acidithiobacillus RepID=B7J3P9_ACIF2
Integral membrane protein {ECO:0000313|EMBL:ACK80538.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_15_9
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4985..5641
DNA (657bp) protein (219aa)
MIP family channel protein
Major intrinsic protein n=3 Tax=Acidithiobacillus RepID=B5EL71_ACIF5
Major intrinsic protein {ECO:0000313|EMBL:ACH82587.1}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_15_10

Not on your lists

5810..6415
DNA (606bp) protein (202aa)
phosphoglycerate mutase family protein
Phosphoglycerate mutase n=5 Tax=root RepID=B5EL72_ACIF5
Putative mutase {ECO:0000313|EMBL:CBI05062.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_15_11
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6446..7282)
DNA (837bp) protein (279aa)
speE; spermidine synthase (EC:2.5.1.16)
Spermidine synthase n=3 Tax=Acidithiobacillus RepID=B7J3Q2_ACIF2
Polyamine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Putrescine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Spermidine synthase {ECO:0000256|HAMAP-Rule:MF_00198}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_15_12
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7398..7799)
DNA (402bp) protein (134aa)
s-adenosylmethionine decarboxylase proenzyme (EC:4.1.1.50)
S-adenosylmethionine decarboxylase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624E0E
S-adenosylmethionine decarboxylase proenzyme {ECO:0000255|HAMAP-Rule:MF_00464}; Short=AdoMetDC {ECO:0000255|HAMAP-Rule:MF_00464};; Short=SAMDC {ECO:0000255|HAMAP-Rule:MF_00464};; EC=4.1.1.50 {ECO:0000255|HAMAP-Rule:MF_00464};; Contains:; S-adenosylmethionine decarboxylase beta chain {ECO:0000255|HAMAP-Rule:MF_00464}; Contains:; S-adenosylmethionine decarboxylase alpha chain {ECO:0000255|HAMAP-Rule:MF_00464}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_15_13
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7882..8709
DNA (828bp) protein (276aa)
toluene ABC transporter ATP-binding protein
Toluene ABC transporter, ATP-binding protein, putative n=2 Tax=Acidithiobacillus ferrooxidans RepID=B7J3Q4_ACIF2
ABC transporter related {ECO:0000313|EMBL:ACH82591.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_15_14

Not on your lists

8712..9494
DNA (783bp) protein (261aa)
toluene tolerance protein Ttg2B
Toluene tolerance protein Ttg2B n=1 Tax=mine drainage metagenome RepID=E6QCY1_9ZZZZ
Toluene tolerance protein Ttg2B {ECO:0000313|EMBL:CBI05057.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_15_15
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9509..9967
DNA (459bp) protein (153aa)
mce-like protein
Mammalian cell entry related domain protein n=3 Tax=root RepID=B5EL77_ACIF5
Mce-related protein {ECO:0000313|EMBL:ACK77854.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_15_16
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9984..10619
DNA (636bp) protein (212aa)
toluene tolerance protein
Toluene tolerance family protein n=4 Tax=root RepID=B5EL78_ACIF5
Toluene tolerance protein, putative {ECO:0000313|EMBL:ACK77842.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_15_17
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10691..10933
DNA (243bp) protein (81aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) RepID=B7J3Q8_ACIF2
Uncharacterized protein {ECO:0000313|EMBL:ACK79742.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_15_18
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10926..11846
DNA (921bp) protein (307aa)
ABC transporter ATP-binding protein
ABC transporter related n=4 Tax=root RepID=B5EL80_ACIF5
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ACK80274.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_15_19
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11849..12112
DNA (264bp) protein (88aa)
S4 domain-containing protein
RNA-binding S4 domain protein n=4 Tax=root RepID=B5EL81_ACIF5
RNA-binding S4 domain protein {ECO:0000313|EMBL:ACH82597.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_15_20
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12109..13110
DNA (1002bp) protein (334aa)
pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase n=4 Tax=root RepID=PDXA_ACIF2
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
JSantini_Fe4_scaffold_15_21
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13137..13691)
DNA (555bp) protein (185aa)
HNH endonuclease domain-containing protein
HNH endonuclease n=3 Tax=root RepID=B5EL83_ACIF5
HNH endonuclease domain protein {ECO:0000313|EMBL:ACK79294.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_15_22

Not on your lists


13757..14560
DNA (804bp) protein (268aa)
ksgA; dimethyladenosine transferase (EC:2.1.1.-)
S-adenosylmethionine-6-N',N'-adenosyl (RRNA) dimethyltransferase, kasugamycin resistance n=1 Tax=mine drainage metagenome RepID=E6QCX3_9ZZZZ
S-adenosylmethionine-6-N',N'-adenosyl (RRNA) dimethyltransferase, kasugamycin resistance {ECO:0000313|EMBL:CBI05049.1}; EC=2.1.1.- {ECO:0000313|EMBL:CBI05049.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_15_23
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14557..15027
DNA (471bp) protein (157aa)
hypothetical protein
Conserved domain protein n=3 Tax=Acidithiobacillus RepID=B7J3R4_ACIF2
Uncharacterized protein {ECO:0000313|EMBL:ACH82601.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_15_24
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14990..15877)
DNA (888bp) protein (296aa)
hypothetical protein
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QCX1_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:ACK80573.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_15_25

Not on your lists


comp(15834..17573)
DNA (1740bp) protein (580aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=4 Tax=root RepID=SYR_ACIF2
Arginyl-tRNA synthetase {ECO:0000313|EMBL:CBI05046.1}; EC=6.1.1.19 {ECO:0000313|EMBL:CBI05046.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_15_26
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17713..19275)
DNA (1563bp) protein (521aa)
major facilitator superfamily protein
Major facilitator superfamily MFS_1 n=1 Tax=Acidithiobacillus ferrooxidans (strain ATCC 53993) RepID=B5EL88_ACIF5
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACH82604.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_15_27
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19366..19614
DNA (249bp) protein (83aa)
LysR family transcriptional regulator
Transcriptional regulator, LysR family n=3 Tax=root RepID=B5EL89_ACIF5
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACK79185.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_15_28
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19690..20259
DNA (570bp) protein (190aa)
LysR family transcriptional regulator
Transcriptional regulator, LysR family n=3 Tax=root RepID=B5EL89_ACIF5
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACH82605.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_15_29

Not on your lists

comp(20275..21186)
DNA (912bp) protein (304aa)
protein-(glutamine-N5) methyltransferase, 50S ribosomal protein L3-specific
N5-glutamine methyltransferase n=1 Tax=mine drainage metagenome RepID=E6QCW7_9ZZZZ
N5-glutamine methyltransferase {ECO:0000313|EMBL:CBI05043.1}; EC=2.1.1.- {ECO:0000313|EMBL:CBI05043.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_15_30
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21187..21954)
DNA (768bp) protein (256aa)
exodeoxyribonuclease III Xth (EC:4.2.99.18)
Exodeoxyribonuclease III Xth n=3 Tax=Acidithiobacillus RepID=B5EL91_ACIF5
Exodeoxyribonuclease III Xth {ECO:0000313|EMBL:ACH82607.1}; EC=4.2.99.18 {ECO:0000313|EMBL:ACH82607.1};; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
Displaying items 1-30 of 165 in total

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