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JSantini_Fe4_scaffold_55

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Displaying items 1-30 of 66 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_Fe4_scaffold_55_1
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..415
DNA (414bp) protein (138aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JMI5_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:AEM47014.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe4_scaffold_55_2

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comp(1496..1732)
DNA (237bp) protein (79aa)
hypothetical protein
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QBR0_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI04636.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_55_3
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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1864..2040
DNA (177bp) protein (59aa)
hypothetical protein
Putative uncharacterized protein n=3 Tax=Acidithiobacillus RepID=B7JBL9_ACIF2
Uncharacterized protein {ECO:0000313|EMBL:ACK79621.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_55_4

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2056..3300
DNA (1245bp) protein (415aa)
group 1 glycosyl transferase
Putative Glycosyl transferase, group 1 family protein n=1 Tax=mine drainage metagenome RepID=E6QBQ7_9ZZZZ
Putative Glycosyl transferase, group 1 family protein {ECO:0000313|EMBL:CBI04633.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_55_5
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3530..4222)
DNA (693bp) protein (231aa)
hypothetical protein
Membrane protein, putative n=3 Tax=Acidithiobacillus RepID=B7JBM1_ACIF2
Uncharacterized protein {ECO:0000313|EMBL:ACH83672.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_55_6

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4451..5113
DNA (663bp) protein (221aa)
exodeoxyribonuclease X
Exonuclease RNase T and DNA polymerase III n=3 Tax=root RepID=B5ES02_ACIF5
Putative DNA exonuclease X {ECO:0000313|EMBL:CBI04631.1}; EC=3.1.11.- {ECO:0000313|EMBL:CBI04631.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_55_7

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comp(5086..5712)
DNA (627bp) protein (209aa)
hypothetical protein
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QBQ4_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI04630.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_55_8
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5709..6110)
DNA (402bp) protein (134aa)
Smr protein/MutS2
Smr protein/MutS2 n=1 Tax=Acidithiobacillus ferrooxidans (strain ATCC 53993) RepID=B5ES04_ACIF5
Smr protein/MutS2 {ECO:0000313|EMBL:ACH83675.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_55_9

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comp(6157..9990)
DNA (3834bp) protein (1278aa)
FAD linked oxidase domain-containing protein
Putative D-lactate dehydrogenase (Cytochrome) n=1 Tax=mine drainage metagenome RepID=E6QBQ2_9ZZZZ
Putative D-lactate dehydrogenase (Cytochrome) {ECO:0000313|EMBL:CBI04628.1}; EC=1.1.2.4 {ECO:0000313|EMBL:CBI04628.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_55_10

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comp(9990..10877)
DNA (888bp) protein (296aa)
panC; pantoate--beta-alanine ligase (EC:6.3.2.1)
Pantothenate synthetase n=3 Tax=root RepID=PANC_ACIF2
Pantoate--beta-alanine ligase (Pantothenate synthetase) (Pantoate activating enzyme) {ECO:0000313|EMBL:CBI04627.1}; EC=6.3.2.1 {ECO:0000313|EMBL:CBI04627.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_55_11
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10828..11613)
DNA (786bp) protein (262aa)
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase n=3 Tax=Acidithiobacillus RepID=PANB_ACIF2
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
JSantini_Fe4_scaffold_55_12

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comp(11615..12217)
DNA (603bp) protein (201aa)
deoxyguanosine kinase/deoxyadenosine kinase
Deoxynucleoside kinase n=1 Tax=mine drainage metagenome RepID=E6QBP9_9ZZZZ
Deoxynucleoside kinase {ECO:0000313|EMBL:CBI04625.1}; EC=2.7.1.113 {ECO:0000313|EMBL:CBI04625.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_55_13

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comp(12214..12783)
DNA (570bp) protein (190aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3)
7,8-dihydro-6-hydroxymethylpterin-pyrophosphokin ase n=2 Tax=root RepID=E6QBP8_9ZZZZ
7,8-dihydro-6-hydroxymethylpterin-pyrophosphokin ase {ECO:0000313|EMBL:CBI04624.1}; EC=2.7.6.3 {ECO:0000313|EMBL:CBI04624.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_55_14
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12741..14093)
DNA (1353bp) protein (451aa)
polyA polymerase family protein
Polynucleotide adenylyltransferase region n=3 Tax=Acidithiobacillus RepID=B5ES10_ACIF5
Polynucleotide adenylyltransferase region {ECO:0000313|EMBL:ACH83681.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_55_15

Not on your lists

comp(14115..15608)
DNA (1494bp) protein (498aa)
poly(A) polymerase (EC:2.7.7.19)
Putative Poly(A) polymerase, PcnB n=1 Tax=mine drainage metagenome RepID=E6QBP6_9ZZZZ
Putative Poly(A) polymerase, PcnB {ECO:0000313|EMBL:CBI04622.1}; EC=2.7.7.19 {ECO:0000313|EMBL:CBI04622.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_55_16

Not on your lists

comp(15743..16747)
DNA (1005bp) protein (335aa)
family 2 glycosyl transferase
Glycosyl transferase, family 2 n=1 Tax=mine drainage metagenome RepID=E6QBP5_9ZZZZ
Glycosyl transferase, family 2 {ECO:0000313|EMBL:CBI04621.1}; EC=2.4.1.- {ECO:0000313|EMBL:CBI04621.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_55_17
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16887..18347
DNA (1461bp) protein (487aa)
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase n=4 Tax=Acidithiobacillus RepID=B5ES13_ACIF5
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_55_18

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18351..19895
DNA (1545bp) protein (515aa)
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase (Glutamine-hydrolyzing) (Glutamine amidotransferase) (GMP synthetase) (GMPS) n=1 Tax=mine drainage metagenome RepID=E6QBP3_9ZZZZ
GMP synthase (Glutamine-hydrolyzing) (Glutamine amidotransferase) (GMP synthetase) (GMPS) {ECO:0000313|EMBL:CBI04619.1}; EC=6.3.5.2 {ECO:0000313|EMBL:CBI04619.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_55_19
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20069..20323
DNA (255bp) protein (85aa)
plasmid stability protein
Plasmid stability protein-like protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ES15_ACIF5
Plasmid stability protein-like protein {ECO:0000313|EMBL:ACH83686.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_55_20
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20324..20743
DNA (420bp) protein (140aa)
PilT protein domain-containing protein
Ribonuclease VapC n=3 Tax=Acidithiobacillus RepID=B5ES16_ACIF5
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
JSantini_Fe4_scaffold_55_21
Thioalkalivibrio thiocyanoxidans, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20761..20973
DNA (213bp) protein (71aa)
AbrB family transcriptional regulator
Transcriptional regulator, AbrB family n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DKT8_9GAMM
AbrB family transcriptional regulator {ECO:0000313|EMBL:AHE98981.1}; TaxID=713587 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio thiocyanoxidans ARh 4.;"
JSantini_Fe4_scaffold_55_22

Not on your lists

20973..21128
DNA (156bp) protein (52aa)
hypothetical protein
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QBX0_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI04696.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_55_23
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21808..23427
DNA (1620bp) protein (540aa)
amino acid permease family protein
Amino acid permease-associated region n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ES19_ACIF5
Amino acid permease family protein {ECO:0000313|EMBL:ACK78826.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_55_24
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23518..24717
DNA (1200bp) protein (400aa)
glutamate 5-kinase (EC:2.7.2.11)
Glutamate 5-kinase n=5 Tax=root RepID=B5ES20_ACIF5
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00057535}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_55_25
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24792..27149)
DNA (2358bp) protein (786aa)
mechanosensitive ion channel family protein
Mechanosensitive ion channel family protein n=3 Tax=Acidithiobacillus RepID=B7JBP0_ACIF2
Mechanosensitive ion channel family protein {ECO:0000313|EMBL:ACK80725.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_55_26
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27518..27796
DNA (279bp) protein (93aa)
hypothetical protein
Uncharacterized protein n=4 Tax=root RepID=E6QBW4_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:ACH83693.1}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_55_27

Not on your lists

comp(27824..28648)
DNA (825bp) protein (275aa)
hypothetical protein
Putative Ferritin/ribonucleotide reductase n=1 Tax=mine drainage metagenome RepID=E6QBW3_9ZZZZ
Putative Ferritin/ribonucleotide reductase {ECO:0000313|EMBL:CBI04689.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_55_28
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28786..29421
DNA (636bp) protein (212aa)
Sua5/YciO/YrdC/YwlC family protein
Sua5/YciO/YrdC/YwlC family protein n=3 Tax=root RepID=B5ES24_ACIF5
Sua5/YciO/YrdC/YwlC family protein {ECO:0000313|EMBL:ACH83695.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_55_29
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29472..30131
DNA (660bp) protein (220aa)
membrane-associated zinc metalloprotease
Peptidase M50 n=3 Tax=Acidithiobacillus RepID=B5ES25_ACIF5
Peptidase M50 {ECO:0000313|EMBL:ACH83696.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_55_30

Not on your lists

30131..31342
DNA (1212bp) protein (404aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Putative Tryptophanyl-tRNA synthetase n=1 Tax=mine drainage metagenome RepID=E6QBW0_9ZZZZ
Putative Tryptophanyl-tRNA synthetase {ECO:0000313|EMBL:CBI04686.1}; EC=6.1.1.2 {ECO:0000313|EMBL:CBI04686.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Displaying items 1-30 of 66 in total

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