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JSantini_Fe4_scaffold_63

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Displaying items 31-56 of 56 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_Fe4_scaffold_63_31
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41293..42117
DNA (825bp) protein (275aa)
winged helix family two component transcriptional regulator
Transcriptional regulator, putative n=3 Tax=root RepID=B7J9Q8_ACIF2
Putative two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ACH84744.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_32
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42302..44635
DNA (2334bp) protein (778aa)
TonB-dependent receptor
TonB-dependent receptor n=3 Tax=Acidithiobacillus RepID=B7J9Q9_ACIF2
TonB-dependent receptor {ECO:0000313|EMBL:ACK79569.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_63_33
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44831..47194
DNA (2364bp) protein (788aa)
TonB-dependent receptor
TonB-dependent receptor n=3 Tax=Acidithiobacillus RepID=B5EPV1_ACIF5
TonB-dependent receptor {ECO:0000313|EMBL:ACH84746.1}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_34
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47411..47515)
DNA (105bp) protein (35aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrooxidans (strain ATCC 53993) RepID=B5EPV4_ACIF5
Uncharacterized protein {ECO:0000313|EMBL:ACH84749.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_35
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47766..50342)
DNA (2577bp) protein (859aa)
cation transporting P-type ATPase
ATPase, P-type (Transporting), HAD superfamily, subfamily IC n=3 Tax=Acidithiobacillus RepID=B5EPV5_ACIF5
ATPase, P-type (Transporting), HAD superfamily, subfamily IC {ECO:0000313|EMBL:ACH84750.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_36
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50382..50807)
DNA (426bp) protein (142aa)
msrB; methionine-R-sulfoxide reductase (EC:1.8.4.-)
Peptide methionine sulfoxide reductase MsrB n=4 Tax=root RepID=B5EPV7_ACIF5
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_63_37
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50822..51409)
DNA (588bp) protein (196aa)
msrA; peptide-methionine (S)-S-oxide reductase (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA n=3 Tax=Acidithiobacillus RepID=B5EPV8_ACIF5
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_63_38

Not on your lists

51560..52468
DNA (909bp) protein (303aa)
thiol:disulfide interchange protein DsbG
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6Q8K7_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI03533.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_63_39

Not on your lists

52528..53184
DNA (657bp) protein (219aa)
nadD; nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Nicotinic acid mononucleotide adenylyltransferase, NAD(P)-dependent n=1 Tax=mine drainage metagenome RepID=E6Q8K5_9ZZZZ
Nicotinic acid mononucleotide adenylyltransferase, NAD(P)-dependent {ECO:0000313|EMBL:CBI03531.1}; EC=2.7.7.18 {ECO:0000313|EMBL:CBI03531.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_63_40
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53208..53564
DNA (357bp) protein (119aa)
iojap family protein
Ribosomal silencing factor RsfS n=4 Tax=root RepID=B5EPW1_ACIF5
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_41
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53571..54044
DNA (474bp) protein (158aa)
rRNA large subunit methyltransferase
Ribosomal RNA large subunit methyltransferase H n=3 Tax=Acidithiobacillus RepID=RLMH_ACIF2
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
JSantini_Fe4_scaffold_63_42
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54052..54489
DNA (438bp) protein (146aa)
hypothetical protein
Lipoprotein, putative n=3 Tax=Acidithiobacillus RepID=B7J9S4_ACIF2
Uncharacterized protein {ECO:0000313|EMBL:ACH84758.1}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_43
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54486..55367
DNA (882bp) protein (294aa)
hypothetical protein
Putative uncharacterized protein n=3 Tax=Acidithiobacillus RepID=B5EPW4_ACIF5
Uncharacterized protein {ECO:0000313|EMBL:ACH84759.1}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_44
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55364..55951
DNA (588bp) protein (196aa)
maf-1; maf protein
Maf-like protein Lferr_2566 n=4 Tax=Acidithiobacillus RepID=B5EPW5_ACIF5
Maf-like protein Lferr_2566 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_45
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55948..57438
DNA (1491bp) protein (497aa)
Rne/Rng family ribonuclease
Ribonuclease, Rne/Rng family n=3 Tax=Acidithiobacillus RepID=B5EPW6_ACIF5
Ribonuclease, Rne/Rng family {ECO:0000313|EMBL:ACK79988.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_63_46
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57477..58727)
DNA (1251bp) protein (417aa)
sigma-54 dependent DNA-binding response regulator
Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPW7_ACIF5
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:ACH84762.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_47
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58734..59045)
DNA (312bp) protein (104aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrooxidans (strain ATCC 53993) RepID=B5EPW8_ACIF5
Uncharacterized protein {ECO:0000313|EMBL:ACH84763.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_48
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59026..60573)
DNA (1548bp) protein (516aa)
integral membrane sensor signal transduction histidine kinase
Integral membrane sensor signal transduction histidine kinase n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPW9_ACIF5
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_49
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60719..60949)
DNA (231bp) protein (77aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrooxidans (strain ATCC 53993) RepID=B5EPX0_ACIF5
Uncharacterized protein {ECO:0000313|EMBL:ACH84765.1}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_50
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61241..61522)
DNA (282bp) protein (94aa)
hypothetical protein
Probable Fe(2+)-trafficking protein n=3 Tax=Acidithiobacillus RepID=FETP_ACIF2
Probable Fe(2+)-trafficking protein {ECO:0000256|HAMAP-Rule:MF_00686, ECO:0000256|SAAS:SAAS00073862}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
JSantini_Fe4_scaffold_63_51
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62230..62703
DNA (474bp) protein (158aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NRJ8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AIA56601.1}; TaxID=637389 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus ATCC 51756.;"
JSantini_Fe4_scaffold_63_52
Chromobacterium piscinae, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62983..63786)
DNA (804bp) protein (268aa)
aldolase
Uncharacterized protein n=1 Tax=Pseudomonas alcaligenes OT 69 RepID=U3H561_PSEAC
Aldolase {ECO:0000313|EMBL:KIA80604.1}; TaxID=686831 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium piscinae.;"
JSantini_Fe4_scaffold_63_53
Chromobacterium piscinae, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63755..64522)
DNA (768bp) protein (256aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Burkholderia glumae (strain BGR1) RepID=C5AG55_BURGB
Uncharacterized protein {ECO:0000313|EMBL:KIA80603.1}; TaxID=686831 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium piscinae.;"
JSantini_Fe4_scaffold_63_54
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64613..65281)
DNA (669bp) protein (223aa)
Tax=RBG_16_Gamma2_60_9_curated
JSantini_Fe4_scaffold_63_55
R_Gammaproteobacteria_38_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65420..65773)
DNA (354bp) protein (118aa)
molybdopterin and thiamine biosynthesis dinucleotide-utilizing enzyme
Molybdopterin and thiamine biosynthesis dinucleotide-utilizing enzyme (Fragment) n=1 Tax=uncultured bacterium RepID=K2BLI5_9BACT
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_38_11_curated
JSantini_Fe4_scaffold_63_56
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65828..65971)
DNA (144bp) protein (48aa)
ISAtc1-like protein
ISAtc1-like protein n=1 Tax=Acidithiobacillus caldus (strain SM-1) RepID=F9ZL22_ACICS
ISAtc1-like protein {ECO:0000313|EMBL:AEK58122.1}; TaxID=990288 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus (strain SM-1).;"
Displaying items 31-56 of 56 in total

View Taxonomy
NameRatio
Acidithiobacillus ferrooxidans
58.93%
mine drainage metagenome
21.43%
Acidithiobacillus sp. GGI-221
7.14%
Chromobacterium piscinae
3.57%
Acidithiobacillus caldus
3.57%
unknown
1.79%
R_Gammaproteobacteria_38_11
1.79%
RBG_16_Gamma2_60_9_curated
1.79%
Acidithiobacillus ferrooxidans: 0.5892857142857143mine drainage metagenome: 0.21428571428571427Acidithiobacillus sp. GGI-221: 0.07142857142857142Acidithiobacillus caldus: 0.03571428571428571Chromobacterium piscinae: 0.03571428571428571RBG_16_Gamma2_60_9_curated: 0.017857142857142856R_Gammaproteobacteria_38_11: 0.017857142857142856unknown: 0.017857142857142856Acidithiobacillus ferrooxidansmine drainage metagenome