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JSantini_Fe4_scaffold_63

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Displaying items 1-30 of 56 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_Fe4_scaffold_63_1
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..531)
DNA (531bp) protein (177aa)
ntrC; nitrogen regulation protein NR(I)
Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPH2_ACIF5
Nitrogen metabolism transcriptional regulator, NtrC, Fis Family {ECO:0000313|EMBL:ACH84713.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_2
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(528..1613)
DNA (1086bp) protein (362aa)
signal transduction histidine kinase, nitrogen specific, NtrB
Signal transduction histidine kinase, nitrogen specific, NtrB n=3 Tax=root RepID=B5EPH3_ACIF5
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_63_3
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1834..2694
DNA (861bp) protein (287aa)
hypothetical protein
20S proteasome, A and B subunits n=4 Tax=root RepID=B5EPH4_ACIF5
Putative proteasome-type protease {ECO:0000313|EMBL:EGQ61284.1}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
JSantini_Fe4_scaffold_63_4

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3009..4472
DNA (1464bp) protein (488aa)
hypothetical protein
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QEP6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI05672.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_63_5
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4457..5443
DNA (987bp) protein (329aa)
hypothetical protein
Uncharacterized protein n=3 Tax=root RepID=E6QEP7_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:ACH84717.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_6

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5483..8845
DNA (3363bp) protein (1121aa)
transglutaminase
Putative Cysteine proteinase n=1 Tax=mine drainage metagenome RepID=E6QEP8_9ZZZZ
Putative Cysteine proteinase {ECO:0000313|EMBL:CBI05674.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_63_7
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9304..11238
DNA (1935bp) protein (645aa)
hypothetical protein
PrkA family serine protein kinase n=4 Tax=root RepID=F8XSP9_9GAMM
Putative serine protein kinase, PrkA {ECO:0000313|EMBL:ACH84719.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_8
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11519..12835
DNA (1317bp) protein (439aa)
amt-2; ammonium transporter
Ammonium transporter n=5 Tax=root RepID=B5EPS5_ACIF5
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_9
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12937..14241
DNA (1305bp) protein (435aa)
hypothetical protein
Uncharacterized protein n=4 Tax=root RepID=E6QEQ1_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:ACH84721.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_10

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14234..15709
DNA (1476bp) protein (492aa)
SpoVR family protein
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QEQ2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI05678.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_63_11
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15891..17063
DNA (1173bp) protein (391aa)
hypothetical protein
Putative uncharacterized protein n=3 Tax=Acidithiobacillus RepID=B5EPS8_ACIF5
Uncharacterized protein {ECO:0000313|EMBL:ACH84723.1}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_12
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17117..17455
DNA (339bp) protein (113aa)
glnK-1; nitrogen regulatory protein P-II 2
Nitrogen regulatory protein P-II n=3 Tax=Acidithiobacillus RepID=B5EPS9_ACIF5
Nitrogen regulatory protein P-II 2 {ECO:0000313|EMBL:EGQ63417.1}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
JSantini_Fe4_scaffold_63_13

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17510..18814
DNA (1305bp) protein (435aa)
amt-1; ammonium transporter
Ammonia channel (Ammonia transporter) n=1 Tax=mine drainage metagenome RepID=E6QEQ5_9ZZZZ
Ammonia channel (Ammonia transporter) {ECO:0000313|EMBL:CBI05681.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_63_14

Not on your lists

18913..19626
DNA (714bp) protein (238aa)
glutamine amidotransferase class-I domain-containing protein
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QEQ6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI05682.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_63_15
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19631..20017)
DNA (387bp) protein (129aa)
lipoprotein
Lipoprotein, putative n=3 Tax=Acidithiobacillus RepID=B7J9A9_ACIF2
Uncharacterized protein {ECO:0000313|EMBL:ACH84727.1}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_16
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20264..20635
DNA (372bp) protein (124aa)
lipoprotein
17 kDa surface antigen n=4 Tax=root RepID=B5EPT3_ACIF5
17 kDa surface antigen {ECO:0000313|EMBL:ACH84728.1}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_17
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20855..21940
DNA (1086bp) protein (362aa)
rare lipoprotein A
Rare lipoprotein A n=4 Tax=root RepID=B5EPT4_ACIF5
Rare lipoprotein A {ECO:0000313|EMBL:ACH84729.1}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_18
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21921..22229)
DNA (309bp) protein (103aa)
hypothetical protein
Uncharacterized protein n=3 Tax=root RepID=E6QER0_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:ACH84730.1}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_19
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22226..23542)
DNA (1317bp) protein (439aa)
voltage-gated potassium channel
Ion transport 2 domain protein n=3 Tax=Acidithiobacillus RepID=B5EPT6_ACIF5
Ion transport 2 domain protein {ECO:0000313|EMBL:ACH84731.1}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_20
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23654..24823)
DNA (1170bp) protein (390aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=3 Tax=Acidithiobacillus RepID=B5EPT7_ACIF5
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:ACK78960.1}; EC=3.4.16.4 {ECO:0000313|EMBL:ACK78960.1};; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_63_21

Not on your lists

comp(24934..26553)
DNA (1620bp) protein (540aa)
pgi; glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) n=1 Tax=mine drainage metagenome RepID=E6QER4_9ZZZZ
Glucose-6-phosphate isomerase (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) {ECO:0000313|EMBL:CBI05690.1}; EC=5.3.1.9 {ECO:0000313|EMBL:CBI05690.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_63_22
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26997..28688
DNA (1692bp) protein (564aa)
dolichyl-phosphate-mannose-protein mannosyltransferase family protein
Glycosyl transferase family 39 n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPT9_ACIF5
Glycosyl transferase family 39 {ECO:0000313|EMBL:ACH84734.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_23

Not on your lists

28802..29179
DNA (378bp) protein (126aa)
crcB protein
Putative Camphor resistance CrcB protein n=1 Tax=mine drainage metagenome RepID=E6QER8_9ZZZZ
Putative Camphor resistance CrcB protein {ECO:0000313|EMBL:CBI05694.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_63_24

Not on your lists

29190..29507
DNA (318bp) protein (106aa)
hypothetical protein
Uncharacterized protein n=4 Tax=root RepID=E6QER9_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI05695.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_63_25
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29601..30479
DNA (879bp) protein (293aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPU2_ACIF5
Uncharacterized protein {ECO:0000313|EMBL:ACH84737.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_63_26
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30581..31840
DNA (1260bp) protein (420aa)
cfa; cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79)
Cyclopropane-fatty-acyl-phospholipid synthase n=4 Tax=root RepID=B5EPU3_ACIF5
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:ACK79683.1}; EC=2.1.1.79 {ECO:0000313|EMBL:ACK79683.1};; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_63_27
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32077..35469
DNA (3393bp) protein (1131aa)
recC; exodeoxyribonuclease V subunit gamma (EC:3.1.11.5)
Exodeoxyribonuclease V, gamma subunit n=3 Tax=Acidithiobacillus RepID=B5EPU5_ACIF5
RecBCD enzyme subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01486};; Exonuclease V subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; Helicase/nuclease RecBCD subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_63_28

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35466..39062
DNA (3597bp) protein (1199aa)
recB; exodeoxyribonuclease V subunit beta (EC:3.1.11.5)
Putative exodeoxyribonuclease V, beta subunit recB n=1 Tax=mine drainage metagenome RepID=E6QEN8_9ZZZZ
Putative exodeoxyribonuclease V, beta subunit recB {ECO:0000313|EMBL:CBI05664.1}; EC=3.1.11.5 {ECO:0000313|EMBL:CBI05664.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_63_29

Not on your lists

39059..41011
DNA (1953bp) protein (651aa)
exodeoxyribonuclease V subunit alpha (EC:3.1.11.5)
Putative exodeoxyribonuclease V, alpha subunit recD n=1 Tax=mine drainage metagenome RepID=E6QEN9_9ZZZZ
Putative exodeoxyribonuclease V, alpha subunit recD {ECO:0000313|EMBL:CBI05665.1}; EC=3.1.11.5 {ECO:0000313|EMBL:CBI05665.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_63_30
unknown

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comp(41093..41254)
DNA (162bp) protein (54aa)

This feature has no annotations

Displaying items 1-30 of 56 in total

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