ggKbase home page

JSantini_Fe4_scaffold_95

Search features with annotation key words

Displaying items 1-30 of 58 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_Fe4_scaffold_95_1
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..159
DNA (159bp) protein (53aa)
tuf-1; elongation factor Tu
Elongation factor Tu n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JRU7_9GAMM
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_95_2

Not on your lists


159..467
DNA (309bp) protein (103aa)
rpsJ; 30S ribosomal protein S10
30S ribosomal protein S10 n=4 Tax=root RepID=RS10_ACIF2
30S ribosomal protein S10 {ECO:0000313|EMBL:CBI06535.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_95_3

Not on your lists


485..1117
DNA (633bp) protein (211aa)
rplC; 50S ribosomal protein L3
50S ribosomal protein L3 n=5 Tax=root RepID=RL3_ACIF2
50S ribosomal subunit protein L3 {ECO:0000313|EMBL:CBI06534.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_95_4
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1128..1745
DNA (618bp) protein (206aa)
rplD; 50S ribosomal protein L4
50S ribosomal protein L4 n=4 Tax=root RepID=RL4_ACIF2
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
JSantini_Fe4_scaffold_95_5
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1742..2035
DNA (294bp) protein (98aa)
rplW; 50S ribosomal protein L23
50S ribosomal protein L23 n=2 Tax=Acidithiobacillus ferrooxidans RepID=RL23_ACIF2
50S ribosomal protein L23 {ECO:0000255|HAMAP-Rule:MF_01369}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_95_6

Not on your lists


2052..2876
DNA (825bp) protein (275aa)
rplB; 50S ribosomal protein L2
50S ribosomal protein L2 n=4 Tax=root RepID=RL2_ACIF2
50S ribosomal subunit protein L2 {ECO:0000313|EMBL:CBI06531.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_95_7
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2895..3170
DNA (276bp) protein (92aa)
rpsS; 30S ribosomal protein S19
30S ribosomal protein S19 n=4 Tax=root RepID=RS19_ACIF2
30S ribosomal protein S19 {ECO:0000255|HAMAP-Rule:MF_00531}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_95_8
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3216..3518
DNA (303bp) protein (101aa)
rplV; 50S ribosomal protein L22
50S ribosomal protein L22 n=4 Tax=root RepID=RL22_ACIF2
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
JSantini_Fe4_scaffold_95_9
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3526..4188
DNA (663bp) protein (221aa)
rpsC; 30S ribosomal protein S3
30S ribosomal protein S3 n=5 Tax=root RepID=B7J473_ACIF2
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
JSantini_Fe4_scaffold_95_10
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4279..4617
DNA (339bp) protein (113aa)
rplP; 50S ribosomal protein L16
50S ribosomal protein L16 n=4 Tax=root RepID=RL16_ACIF2
50S ribosomal protein L16 {ECO:0000255|HAMAP-Rule:MF_01342}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_95_11
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4614..4811
DNA (198bp) protein (66aa)
rpmC; 50S ribosomal protein L29
50S ribosomal protein L29 n=3 Tax=Acidithiobacillus RepID=RL29_ACIF2
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
JSantini_Fe4_scaffold_95_12
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4808..5083
DNA (276bp) protein (92aa)
rpS17; 30S ribosomal protein S17
30S ribosomal protein S17 n=3 Tax=Acidithiobacillus RepID=RS17_ACIF2
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
JSantini_Fe4_scaffold_95_13
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5080..5448
DNA (369bp) protein (123aa)
rplN; 50S ribosomal protein L14
50S ribosomal protein L14 n=3 Tax=root RepID=RL14_ACIF2
50S ribosomal protein L14 {ECO:0000255|HAMAP-Rule:MF_01367}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_95_14

Not on your lists


5458..5778
DNA (321bp) protein (107aa)
rplX; 50S ribosomal protein L24
50S ribosomal protein L24 n=4 Tax=root RepID=RL24_ACIF2
50S ribosomal subunit protein L24 {ECO:0000313|EMBL:CBI06524.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_95_15
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5793..6335
DNA (543bp) protein (181aa)
50S ribosomal protein L5
50S ribosomal protein L5 n=5 Tax=root RepID=B5ELZ1_ACIF5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003931}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_95_16
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6544..6939
DNA (396bp) protein (132aa)
rpsH; 30S ribosomal protein S8
30S ribosomal protein S8 n=4 Tax=root RepID=RS8_ACIF2
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
JSantini_Fe4_scaffold_95_17

Not on your lists


6953..7477
DNA (525bp) protein (175aa)
rplF; 50S ribosomal protein L6
50S ribosomal protein L6 n=4 Tax=root RepID=RL6_ACIF2
50S ribosomal protein L6 {ECO:0000313|EMBL:CBI06521.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_95_18
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7496..7849
DNA (354bp) protein (118aa)
rplR; 50S ribosomal protein L18
50S ribosomal protein L18 n=4 Tax=root RepID=RL18_ACIF2
50S ribosomal protein L18 {ECO:0000255|HAMAP-Rule:MF_01337}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_95_19
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7862..8392
DNA (531bp) protein (177aa)
rpsE; 30S ribosomal protein S5
30S ribosomal protein S5 n=2 Tax=Acidithiobacillus ferrooxidans RepID=RS5_ACIF2
30S ribosomal protein S5 {ECO:0000255|HAMAP-Rule:MF_01307}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_95_20

Not on your lists


8385..8570
DNA (186bp) protein (62aa)
rpmD; 50S ribosomal protein L30
50S ribosomal protein L30 n=3 Tax=root RepID=RL30_ACIF2
50S ribosomal subunit protein L30 {ECO:0000313|EMBL:CBI06542.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_95_21

Not on your lists


8567..9004
DNA (438bp) protein (146aa)
rplO; 50S ribosomal protein L15
50S ribosomal protein L15 n=4 Tax=root RepID=RL15_ACIF2
50S ribosomal subunit protein L15 {ECO:0000313|EMBL:CBI06541.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_95_22

Not on your lists


9004..10335
DNA (1332bp) protein (444aa)
secY; preprotein translocase subunit SecY
Protein translocase subunit SecY n=3 Tax=root RepID=B5ELZ9_ACIF5
Preprotein translocase subunit secY {ECO:0000313|EMBL:CBI06540.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_95_23
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10332..10994
DNA (663bp) protein (221aa)
Nucleoside-triphosphate--adenylate kinase (EC:2.7.4.10)
Adenylate kinase n=2 Tax=root RepID=B5EM00_ACIF5
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_95_24
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10995..11213
DNA (219bp) protein (73aa)
infA; translation initiation factor IF-1
Translation initiation factor IF-1 n=4 Tax=root RepID=B5EM01_ACIF5
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_95_25
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11222..11335
DNA (114bp) protein (38aa)
rpmJ; 50S ribosomal protein L36
50S ribosomal protein L36 n=4 Tax=Acidithiobacillus RepID=RL36_ACIF2
50S ribosomal protein L36 {ECO:0000255|HAMAP-Rule:MF_00251}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_95_26
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11399..11755
DNA (357bp) protein (119aa)
rpsM; 30S ribosomal protein S13
30S ribosomal protein S13 n=4 Tax=root RepID=RS13_ACIF2
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
JSantini_Fe4_scaffold_95_27
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11773..12168
DNA (396bp) protein (132aa)
rpsK; 30S ribosomal protein S11
30S ribosomal protein S11 n=3 Tax=Acidithiobacillus RepID=B5EM97_ACIF5
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_95_28
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12189..12815
DNA (627bp) protein (209aa)
rpsD; 30S ribosomal protein S4
30S ribosomal protein S4 n=2 Tax=Acidithiobacillus ferrooxidans RepID=RS4_ACIF2
30S ribosomal protein S4 {ECO:0000255|HAMAP-Rule:MF_01306}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_95_29
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12838..13857
DNA (1020bp) protein (340aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=4 Tax=Acidithiobacillus RepID=B5EM99_ACIF5
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_95_30

Not on your lists


13888..14262
DNA (375bp) protein (125aa)
rplQ; 50S ribosomal protein L17
50S ribosomal protein L17 n=3 Tax=root RepID=RL17_ACIF2
50S ribosomal subunit protein L17 {ECO:0000313|EMBL:CBI06554.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Displaying items 1-30 of 58 in total

View Taxonomy