ggKbase home page

JSantini_Fe4_scaffold_208

Search features with annotation key words

Displaying 29 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_Fe4_scaffold_208_1
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1160)
DNA (1158bp) protein (386aa)
cytochrome bd ubiquinol oxidase subunit I
Cytochrome bd ubiquinol oxidase subunit I n=3 Tax=Acidithiobacillus RepID=B5EQ67_ACIF5
Cytochrome bd ubiquinol oxidase subunit I {ECO:0000313|EMBL:EGQ63280.1}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
JSantini_Fe4_scaffold_208_2

Not on your lists

comp(1416..1622)
DNA (207bp) protein (69aa)
ferredoxin
Ferredoxin n=1 Tax=mine drainage metagenome RepID=E6Q8I9_9ZZZZ
Ferredoxin {ECO:0000313|EMBL:CBI03515.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_208_3
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1839..2747)
DNA (909bp) protein (303aa)
hypothetical protein
Putative uncharacterized protein n=4 Tax=Acidithiobacillus RepID=B5EJG9_ACIF5
Uncharacterized protein {ECO:0000313|EMBL:ACH83843.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_208_4
unknown

Not on your lists

2829..3053
DNA (225bp) protein (75aa)

This feature has no annotations

JSantini_Fe4_scaffold_208_5
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3016..3996
DNA (981bp) protein (327aa)
dihydrouridine synthase
tRNA-dihydrouridine synthase n=2 Tax=Acidithiobacillus RepID=B7J4N8_ACIF2
Dihydrouridine synthase DuS {ECO:0000313|EMBL:ACH83914.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_208_6
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3999..4292)
DNA (294bp) protein (98aa)
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EJY2_ACIF5
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ACK79175.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_208_7
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4561..6024)
DNA (1464bp) protein (488aa)
zwf; glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
Glucose-6-phosphate 1-dehydrogenase n=5 Tax=root RepID=B5EJY1_ACIF5
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_208_8

Not on your lists

comp(6025..6945)
DNA (921bp) protein (307aa)
6-phosphogluconate dehydrogenase
Putative hydroxyacid dehydrogenase n=1 Tax=mine drainage metagenome RepID=E6QFI7_9ZZZZ
Putative hydroxyacid dehydrogenase {ECO:0000313|EMBL:CBI05978.1}; EC=1.1.1.- {ECO:0000313|EMBL:CBI05978.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_208_9
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7045..8229
DNA (1185bp) protein (395aa)
purT; phosphoribosylglycinamide formyltransferase 2 (EC:2.1.2.-)
Phosphoribosylglycinamide formyltransferase 2 n=3 Tax=Acidithiobacillus RepID=B5EJX9_ACIF5
Phosphoribosylglycinamide formyltransferase 2 {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083136}; Short=GART 2 {ECO:0000256|HAMAP-Rule:MF_01643};; EC=2.1.2.- {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083135};; 5'-phosphoribosylglycinamide transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; Formate-dependent GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01643}; GAR transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_208_10
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8234..9415)
DNA (1182bp) protein (394aa)
aspC; aspartate aminotransferase (EC:2.6.1.1)
Aminotransferase class I and II n=3 Tax=Acidithiobacillus RepID=B5EJX8_ACIF5
Aspartate aminotransferase {ECO:0000313|EMBL:ACK79355.1}; EC=2.6.1.1 {ECO:0000313|EMBL:ACK79355.1};; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_208_11
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9633..12068
DNA (2436bp) protein (812aa)
copper-translocating P-type ATPase (EC:3.6.3.4)
Heavy metal translocating P-type ATPase n=4 Tax=root RepID=B5EJX7_ACIF5
Copper-translocating P-type ATPase {ECO:0000313|EMBL:ACK80759.1}; EC=3.6.3.4 {ECO:0000313|EMBL:ACK80759.1};; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_208_12
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12127..13971
DNA (1845bp) protein (615aa)
ABC transporter
ABC transporter related protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JQZ0_9GAMM
ABC transporter related protein {ECO:0000313|EMBL:CDQ10194.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe4_scaffold_208_13
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14096..14476
DNA (381bp) protein (127aa)
hypothetical protein
Uncharacterized protein n=2 Tax=root RepID=E6QFI3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:ACH83907.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_208_14
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14492..15469
DNA (978bp) protein (326aa)
hypothetical protein
Conserved domain protein n=3 Tax=Acidithiobacillus RepID=B7J4N0_ACIF2
Uncharacterized protein {ECO:0000313|EMBL:ACH83906.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_208_15
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15466..16290
DNA (825bp) protein (275aa)
hypothetical protein
Putative uncharacterized protein n=3 Tax=Acidithiobacillus RepID=B5EJX4_ACIF5
Uncharacterized protein {ECO:0000313|EMBL:ACH83905.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_208_16
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16330..17064
DNA (735bp) protein (245aa)
PspA/IM30 family
Phage shock protein A, PspA n=3 Tax=Acidithiobacillus RepID=B5EJX3_ACIF5
Phage shock protein A, PspA {ECO:0000313|EMBL:ACH83904.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_208_trna_1
unknown

Not on your lists

17133..17206
DNA (74bp)

This feature has no annotations

JSantini_Fe4_scaffold_208_17
unknown

Not on your lists

comp(17247..17387)
DNA (141bp) protein (47aa)

This feature has no annotations

JSantini_Fe4_scaffold_208_18

Not on your lists

17478..17750
DNA (273bp) protein (91aa)
hypothetical protein
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QAT6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI04312.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_208_19
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17747..18241
DNA (495bp) protein (165aa)
GNAT family acetyltransferase
GCN5-related N-acetyltransferase n=3 Tax=Acidithiobacillus RepID=B5EQM7_ACIF5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ACH83377.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_208_20
unknown

Not on your lists

18464..18697
DNA (234bp) protein (78aa)

This feature has no annotations

JSantini_Fe4_scaffold_208_21
unknown

Not on your lists

comp(18862..19017)
DNA (156bp) protein (52aa)

This feature has no annotations

JSantini_Fe4_scaffold_208_22
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19150..19596
DNA (447bp) protein (149aa)
heat shock protein, Hsp20 family
Heat shock protein Hsp20 n=3 Tax=Acidithiobacillus RepID=B5ERR0_ACIF5
Heat shock protein Hsp20 {ECO:0000313|EMBL:ACH83581.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_208_23
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19784..20044
DNA (261bp) protein (87aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Acidithiobacillus RepID=B7JAY6_ACIF2
Uncharacterized protein {ECO:0000313|EMBL:ACK78041.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_208_24
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20095..21573
DNA (1479bp) protein (493aa)
serine protease, DO/DeqQ family
Serine protease, DO/DeqQ family n=2 Tax=Acidithiobacillus RepID=B7JAY5_ACIF2
Serine protease, DO/DeqQ family {ECO:0000313|EMBL:ACK80408.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_208_25

Not on your lists

22262..23674
DNA (1413bp) protein (471aa)
nicotinate phosphoribosyltransferase (EC:2.4.2.11)
Nicotinamide phosphoribosyltransferase (NAmPRTase) (Nampt) (Pre-B-cell colony-enhancing factor 1 homolog) (PBEF) (Visfatin) n=1 Tax=mine drainage metagenome RepID=E6QLU3_9ZZZZ
Nicotinamide phosphoribosyltransferase (NAmPRTase) (Nampt) (Pre-B-cell colony-enhancing factor 1 homolog) (PBEF) (Visfatin) {ECO:0000313|EMBL:CBI08214.1}; EC=2.4.2.12 {ECO:0000313|EMBL:CBI08214.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_208_26

Not on your lists

23732..23983
DNA (252bp) protein (84aa)
transcriptional regulator/antitoxin MazE
PemI family protein n=2 Tax=root RepID=F8XS16_9GAMM
Transcriptional regulator/antitoxin, MazE {ECO:0000313|EMBL:CBI08213.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_208_27
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23980..24360
DNA (381bp) protein (127aa)
PemK family protein
PemK family protein n=1 Tax=Acidithiobacillus sp. GGI-221 RepID=F8XS15_9GAMM
PemK family protein {ECO:0000313|EMBL:EGQ62508.1}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
JSantini_Fe4_scaffold_208_28

Not on your lists

comp(24594..24965)
DNA (372bp) protein (124aa)
transcriptional regulator
Predicted transcriptional regulator n=1 Tax=mine drainage metagenome RepID=E6QDN4_9ZZZZ
Predicted transcriptional regulator {ECO:0000313|EMBL:CBI05310.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Displaying 29 items

View Taxonomy