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JSantini_Fe4_scaffold_317

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_Fe4_scaffold_317_1
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..1265)
DNA (1263bp) protein (421aa)
parC; DNA topoisomerase IV subunit A (EC:5.99.1.-)
DNA topoisomerase 4 subunit A n=3 Tax=Acidithiobacillus RepID=B5EJY4_ACIF5
DNA topoisomerase 4 subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00936};; Topoisomerase IV subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_317_2

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comp(1283..3253)
DNA (1971bp) protein (657aa)
parE; DNA topoisomerase IV subunit B (EC:5.99.1.-)
DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B) n=1 Tax=mine drainage metagenome RepID=E6QC53_9ZZZZ
DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B) {ECO:0000313|EMBL:CBI04779.1}; EC=5.99.1.- {ECO:0000313|EMBL:CBI04779.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_317_3
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3542..4849)
DNA (1308bp) protein (436aa)
sensor histidine kinase
Integral membrane sensor signal transduction histidine kinase n=3 Tax=Acidithiobacillus RepID=B5EJY6_ACIF5
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_317_4
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4846..5508)
DNA (663bp) protein (221aa)
DNA-binding response regulator
Two component transcriptional regulator, winged helix family n=5 Tax=root RepID=B5EJY7_ACIF5
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ACH83918.1}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_317_5
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5586..5897)
DNA (312bp) protein (104aa)
hypothetical protein
Propeptide PepSY amd peptidase M4 n=4 Tax=root RepID=B5EJY8_ACIF5
Propeptide PepSY amd peptidase M4 {ECO:0000313|EMBL:ACH83919.1}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_317_6
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6093..7169)
DNA (1077bp) protein (359aa)
hypothetical protein
Conserved domain protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B7J4P5_ACIF2
Uncharacterized protein {ECO:0000313|EMBL:ACH83920.1}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_317_7
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7212..10238)
DNA (3027bp) protein (1009aa)
acriflavin resistance protein
Acriflavin resistance protein n=2 Tax=Acidithiobacillus RepID=B5EJZ0_ACIF5
Acriflavin resistance protein {ECO:0000313|EMBL:ACH83921.1}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_317_8

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comp(10238..11278)
DNA (1041bp) protein (347aa)
RND family efflux transporter MFP subunit
Putative Secretion protein HlyD n=1 Tax=mine drainage metagenome RepID=E6QC59_9ZZZZ
Putative Secretion protein HlyD {ECO:0000313|EMBL:CBI04785.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_317_9
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11275..12624)
DNA (1350bp) protein (450aa)
outer membrane efflux protein
Outer membrane efflux protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EJZ2_ACIF5
Outer membrane efflux protein {ECO:0000313|EMBL:ACH83923.1}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe4_scaffold_317_10
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13349..13852)
DNA (504bp) protein (168aa)
TonB-dependent receptor
TonB-dependent receptor n=3 Tax=Acidithiobacillus RepID=B5EJZ3_ACIF5
TonB-dependent receptor {ECO:0000313|EMBL:ACK80289.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe4_scaffold_317_11
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13942..14025
DNA (84bp) protein (28aa)
ISAtc1-like protein
Transposase n=1 Tax=Acidithiobacillus ferrooxidans RepID=Q5PXE5_ACIFR
Transposase {ECO:0000313|EMBL:AAV76022.1}; TaxID=920 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (Thiobacillus ferrooxidans).;"
Displaying 11 items

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