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JSantini_Fe4_scaffold_267

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Displaying 16 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_Fe4_scaffold_267_1
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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224..1237
DNA (1014bp) protein (338aa)
site-specific recombinase, phage integrase family
Site-specific recombinase, phage integrase family n=1 Tax=Acidithiobacillus caldus (strain SM-1) RepID=F9ZPL9_ACICS
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:AEK56853.1}; TaxID=990288 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus (strain SM-1).;"
JSantini_Fe4_scaffold_267_2
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1234..2424)
DNA (1191bp) protein (397aa)
Conjugal transfer protein traB
TraB n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NY94_9GAMM
Conjugal transfer protein traB {ECO:0000313|EMBL:AIA55694.1}; TaxID=637389 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus ATCC 51756.;"
JSantini_Fe4_scaffold_267_3
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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2525..4918
DNA (2394bp) protein (798aa)
TraG
TraG n=1 Tax=Acidithiobacillus caldus (strain SM-1) RepID=F9ZMV1_ACICS
TraG {ECO:0000313|EMBL:AEK57860.1}; TaxID=990288 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus (strain SM-1).;"
JSantini_Fe4_scaffold_267_4

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4943..5527
DNA (585bp) protein (195aa)
hypothetical protein
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QGQ2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI06416.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_267_5

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5520..6458
DNA (939bp) protein (313aa)
hypothetical protein
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QGQ1_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI06415.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_267_6
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6514..6852)
DNA (339bp) protein (113aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262513B
Uncharacterized protein {ECO:0000313|EMBL:CDQ11751.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe4_scaffold_267_7
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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7047..7955
DNA (909bp) protein (303aa)
integrase family protein
tyrosine recombinase, phage integrase family protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262513C
Integrase family protein {ECO:0000313|EMBL:AEM49083.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe4_scaffold_267_8

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comp(8003..8485)
DNA (483bp) protein (161aa)
protein of unknown function
Protein containing PilT protein n=1 Tax=mine drainage metagenome RepID=T0Y2B9_9ZZZZ
Protein containing PilT protein {ECO:0000313|EMBL:EQD27153.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_267_9

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comp(8482..9168)
DNA (687bp) protein (229aa)
conserved protein of unknown function
Uncharacterized protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T0ZW65_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD32904.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe4_scaffold_267_10
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9566..10189)
DNA (624bp) protein (208aa)
Lytic transglycosylase catalytic
Bores hole in peptidoglycan layer allowing type IV secretion complex assembly to occur (VirB1) n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NY74_9GAMM
Lytic transglycosylase catalytic {ECO:0000313|EMBL:AIA55674.1}; TaxID=637389 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus ATCC 51756.;"
JSantini_Fe4_scaffold_267_11
unknown

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comp(10186..10545)
DNA (360bp) protein (120aa)

This feature has no annotations

JSantini_Fe4_scaffold_267_12
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10548..11201)
DNA (654bp) protein (218aa)
conjugal transfer protein
Conjugal transfer protein n=1 Tax=Acidithiobacillus caldus (strain SM-1) RepID=F9ZMY3_ACICS
Conjugal transfer protein {ECO:0000313|EMBL:AEK57892.1}; TaxID=990288 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus (strain SM-1).;"
JSantini_Fe4_scaffold_267_13
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11201..13384)
DNA (2184bp) protein (728aa)
DNA topoisomerase III
DNA topoisomerase n=1 Tax=Acidithiobacillus caldus (strain SM-1) RepID=F9ZNS5_ACICS
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=990288 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus (strain SM-1).;"
JSantini_Fe4_scaffold_267_14
unknown

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comp(13541..13849)
DNA (309bp) protein (103aa)

This feature has no annotations

JSantini_Fe4_scaffold_267_15
unknown

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comp(13852..14172)
DNA (321bp) protein (107aa)

This feature has no annotations

JSantini_Fe4_scaffold_267_16
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14308..16326)
DNA (2019bp) protein (673aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BL13 RepID=U9I9N5_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:EIF28083.1}; Flags: Precursor;; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
Displaying 16 items

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