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JSantini_Fe8_scaffold_25

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Displaying items 1-30 of 94 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_Fe8_scaffold_25_1
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..558)
DNA (558bp) protein (186aa)
rfaD; ADP-glyceromanno-heptose 6-epimerase (EC:5.1.3.20)
ADP-glyceromanno-heptose 6-epimerase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FVL9_ACICJ
ADP-L-glycero-D-manno-heptose-6-epimerase {ECO:0000256|SAAS:SAAS00055252}; EC=5.1.3.20 {ECO:0000256|SAAS:SAAS00055236};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
JSantini_Fe8_scaffold_25_2
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

626..931
DNA (306bp) protein (102aa)
Hypothetical protein
Putative uncharacterized protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPP5_GRABC
Uncharacterized protein {ECO:0000313|EMBL:GAN77619.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
JSantini_Fe8_scaffold_25_3
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1059..1565
DNA (507bp) protein (169aa)
Putative cytosolic protein
Hypothetical cytosolic protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPP6_GRABC
Hypothetical cytosolic protein {ECO:0000313|EMBL:ABI63206.1}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
JSantini_Fe8_scaffold_25_4
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1562..2362
DNA (801bp) protein (267aa)
proC; pyrroline-5-carboxylate reductase
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003783175
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
JSantini_Fe8_scaffold_25_5
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2399..3637)
DNA (1239bp) protein (413aa)
putative substrate-binding protein
Substrate-binding protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7YWY5_9RHIZ
Substrate-binding protein {ECO:0000313|EMBL:EMS41004.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
JSantini_Fe8_scaffold_25_6
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3825..4931
DNA (1107bp) protein (369aa)
malate/L-lactate dehydrogenase
Malate/L-lactate dehydrogenase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UB54_METS4
L-lactate dehydrogenase {ECO:0000313|EMBL:GAN78325.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
JSantini_Fe8_scaffold_25_7
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5028..5813)
DNA (786bp) protein (262aa)
alpha/beta hydrolase fold protein
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00031183CA
Hydrolase/esterase/lipase {ECO:0000313|EMBL:GAN78172.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
JSantini_Fe8_scaffold_25_8
bacterium YEK0313, Bacteria

Not on your lists

comp(5813..6721)
DNA (909bp) protein (303aa)
hypothetical protein
Putative membrane protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RRG4_9PROT
Putative inner membrane transporter yiJE {ECO:0000313|EMBL:CEJ11111.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
JSantini_Fe8_scaffold_25_9
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6733..7737)
DNA (1005bp) protein (335aa)
alcohol dehydrogenase
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036CF493
Alcohol dehydrogenase {ECO:0000313|EMBL:GAN76539.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
JSantini_Fe8_scaffold_25_10
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7828..9033)
DNA (1206bp) protein (402aa)
ABC transporter substrate-binding protein
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YDQ0_9BRAD
ABC transporter branched-chain amino acid permease {ECO:0000313|EMBL:GAN76532.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
JSantini_Fe8_scaffold_25_11
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9030..9974)
DNA (945bp) protein (315aa)
inner-membrane translocator
Inner-membrane translocator n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21ZQ6_RHOFD
Innermembrane translocator {ECO:0000313|EMBL:GAN76531.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
JSantini_Fe8_scaffold_25_12
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10007..10879)
DNA (873bp) protein (291aa)
inner-membrane translocator
Branched-chain amino acid ABC-type transport system, permease component n=1 Tax=Variovorax sp. CF313 RepID=J2K0S8_9BURK
ABC transporter integral membrane protein {ECO:0000313|EMBL:GAN76530.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
JSantini_Fe8_scaffold_25_13
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10896..11606)
DNA (711bp) protein (237aa)
livF; high-affinity branched-chain amino acid transport protein (EC:3.6.3.-)
ABC transporter related protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TJV8_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
JSantini_Fe8_scaffold_25_14
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11590..12426)
DNA (837bp) protein (279aa)
ABC transporter-like protein
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Variovorax sp. CF313 RepID=J2T6S4_9BURK
ABC transporter {ECO:0000313|EMBL:GAN76528.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
JSantini_Fe8_scaffold_25_15
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12538..13278)
DNA (741bp) protein (247aa)
O-methyltransferase-like protein
O-methyltransferase-like protein n=1 Tax=Acidiphilium sp. PM RepID=F7S650_9PROT
O-methyltransferase-like protein {ECO:0000313|EMBL:ABQ30643.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
JSantini_Fe8_scaffold_25_16
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13275..13481)
DNA (207bp) protein (69aa)
hypothetical protein
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036B24B3
Uncharacterized protein {ECO:0000313|EMBL:GAN76542.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
JSantini_Fe8_scaffold_25_17
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13611..14642
DNA (1032bp) protein (344aa)
Farnesyl pyrophosphate synthetase (EC:2.5.1.1 2.5.1.10 2.5.1.29 2.5.1.84 2.5.1.91)
Farnesyl pyrophosphate synthetase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BTR3_GRABC
Geranylgeranyl pyrophosphate synthase {ECO:0000313|EMBL:GAN76543.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
JSantini_Fe8_scaffold_25_18
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14650..15243
DNA (594bp) protein (198aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9HEM3_GLUDA
Uncharacterized protein {ECO:0000313|EMBL:CAP55253.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
JSantini_Fe8_scaffold_25_19
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15240..15623
DNA (384bp) protein (128aa)
XRE family transcriptional regulator
Transcriptional regulator, XRE family n=3 Tax=Acidiphilium RepID=A5G2K2_ACICJ
XRE family transcriptional regulator {ECO:0000313|EMBL:EGO94211.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
JSantini_Fe8_scaffold_25_20
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15682..17130
DNA (1449bp) protein (483aa)
major facilitator transporter
Major facilitator superfamily MFS_1 n=3 Tax=Acidiphilium RepID=A5FW29_ACICJ
Major facilitator superfamily multidrug resistance transporter {ECO:0000313|EMBL:GAN77962.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
JSantini_Fe8_scaffold_25_21
unknown

Not on your lists

17127..17243
DNA (117bp) protein (39aa)

This feature has no annotations

JSantini_Fe8_scaffold_25_22
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17243..18364
DNA (1122bp) protein (374aa)
beta-lactamase
Beta-lactamase-related protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T0YFD4_9ZZZZ
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
JSantini_Fe8_scaffold_25_23
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18458..20176
DNA (1719bp) protein (573aa)
PQQ enzyme repeat protein
Methanol/ethanol family PQQ-dependent dehydrogenase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GR56_9BRAD
Tax=RBG_16_Alphaproteobacteria_64_48_curated
JSantini_Fe8_scaffold_25_24
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20257..20820
DNA (564bp) protein (188aa)
cytochrome c
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036FEA45
Cytochrome c {ECO:0000313|EMBL:KJC59673.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
JSantini_Fe8_scaffold_25_25
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20927..21541
DNA (615bp) protein (205aa)
endonuclease/exonuclease/phosphatase
Endonuclease/exonuclease/phosphatase n=2 Tax=Methylobacterium RepID=B0UQ46_METS4
Endonuclease/exonuclease/phosphatase {ECO:0000313|EMBL:ACA16177.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
JSantini_Fe8_scaffold_25_26
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21549..22985)
DNA (1437bp) protein (479aa)
phospholipase D/transphosphatidylase
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI0003725EE1
Phospholipase D/Transphosphatidylase {ECO:0000313|EMBL:ACA16176.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
JSantini_Fe8_scaffold_25_27
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23066..23731)
DNA (666bp) protein (222aa)
putative dienelactone hydrolase (EC:3.1.1.45)
Carboxymethylenebutenolidase n=2 Tax=Acidiphilium RepID=A5FWY7_ACICJ
Putative dienelactone hydrolase {ECO:0000313|EMBL:BAJ80334.1}; EC=3.1.1.45 {ECO:0000313|EMBL:BAJ80334.1};; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
JSantini_Fe8_scaffold_25_28
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23870..25198)
DNA (1329bp) protein (443aa)
fgs; folylpolyglutamate synthase (EC:6.3.2.17)
Bifunctional protein FolC n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RK66_9PROT
Bifunctional protein FolC {ECO:0000313|EMBL:EFH12304.1}; EC=6.3.2.17 {ECO:0000313|EMBL:EFH12304.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
JSantini_Fe8_scaffold_25_29
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25195..26049)
DNA (855bp) protein (285aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=ACCD_GRABC
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000255|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000255|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000255|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000255|HAMAP-Rule:MF_01395};; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
JSantini_Fe8_scaffold_25_30
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26046..26867)
DNA (822bp) protein (274aa)
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RKJ5_9PROT
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
Displaying items 1-30 of 94 in total

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