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JSantini_Fe8_scaffold_84

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Displaying items 1-30 of 40 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_Fe8_scaffold_84_1
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..188
DNA (186bp) protein (62aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FT12_ACICJ
Uncharacterized protein {ECO:0000313|EMBL:ABQ28744.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
JSantini_Fe8_scaffold_84_trna_1
unknown

Not on your lists

comp(336..409)
DNA (74bp)
transferRNA Arg
JSantini_Fe8_scaffold_84_2
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(566..988)
DNA (423bp) protein (141aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Gluconacetobacter sp. SXCC-1 RepID=F3SF41_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAN77014.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
JSantini_Fe8_scaffold_84_3
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1266..2090)
DNA (825bp) protein (275aa)
hemK; protein methyltransferase HemK (EC:2.1.1.-)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003627391
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
JSantini_Fe8_scaffold_84_4
unknown

Not on your lists

comp(2125..2391)
DNA (267bp) protein (89aa)

This feature has no annotations

JSantini_Fe8_scaffold_84_5
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2391..3236)
DNA (846bp) protein (282aa)
Polysaccharide export ATP-binding protein
Polysaccharide export ATP-binding protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BR35_GRABC
Polysaccharide export ATP-binding protein {ECO:0000313|EMBL:ABI62717.1}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
JSantini_Fe8_scaffold_84_6
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3241..4131)
DNA (891bp) protein (297aa)
Polysaccharide export ABC transporter permease protein
Polysaccharide export ABC transporter permease protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BR36_GRABC
ABC transporter polysaccharide/O-antigene exporter {ECO:0000313|EMBL:GAN77447.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
JSantini_Fe8_scaffold_84_7
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4197..4685)
DNA (489bp) protein (163aa)
Outer membrane lipoprotein
Uncharacterized protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RP55_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EFH10914.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
JSantini_Fe8_scaffold_84_8
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4762..6006)
DNA (1245bp) protein (415aa)
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=2 Tax=Acidiphilium RepID=A5FWG5_ACICJ
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosine--tRNA ligase; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
JSantini_Fe8_scaffold_84_9
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6109..7200
DNA (1092bp) protein (364aa)
anmK; anhydro-N-acetylmuramic acid kinase (EC:2.7.1.-)
Anhydro-N-acetylmuramic acid kinase n=2 Tax=Acidiphilium RepID=F0IX81_ACIMA
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
JSantini_Fe8_scaffold_84_10
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7201..7683)
DNA (483bp) protein (161aa)
putative peroxiredoxin (EC:1.11.1.15)
peroxiredoxin n=1 Tax=Elioraea tepidiphila RepID=UPI00036E460D
Peroxiredoxin {ECO:0000313|EMBL:GAN76328.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
JSantini_Fe8_scaffold_84_11
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7937..8485
DNA (549bp) protein (183aa)
transcriptional regulator, algH
UPF0301 protein HMPREF0731_4268 n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RT56_9PROT
UPF0301 protein Asru_0086_05 {ECO:0000256|HAMAP-Rule:MF_00758}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
JSantini_Fe8_scaffold_84_12
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8558..10099
DNA (1542bp) protein (514aa)
tRNA 2-methylthioadenosine synthase
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00037D86BF
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
JSantini_Fe8_scaffold_84_13
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10096..11094
DNA (999bp) protein (333aa)
PhoH-like protein
PhoH family protein n=3 Tax=Acidiphilium RepID=A5FY83_ACICJ
Phosphate starvation-inducible protein PhoH {ECO:0000313|EMBL:GAN79906.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
JSantini_Fe8_scaffold_84_14
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11060..11560
DNA (501bp) protein (167aa)
hypothetical protein
Endoribonuclease YbeY n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=YBEY_GRABC
Endoribonuclease YbeY {ECO:0000255|HAMAP-Rule:MF_00009}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00009};; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
JSantini_Fe8_scaffold_84_15
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11557..12522
DNA (966bp) protein (322aa)
Magnesium and cobalt efflux protein corC
Magnesium and cobalt efflux protein corC n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BVY9_GRABC
Hemolysin/magnesium/cobalt transporter CorC/HlyC {ECO:0000313|EMBL:GAN77722.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
JSantini_Fe8_scaffold_84_16
Acetobacter orientalis, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12670..13140
DNA (471bp) protein (157aa)
GcrA cell cycle regulator
GcrA cell cycle regulator n=1 Tax=Acetobacter pasteurianus RepID=UPI00031ABB02
Uncharacterized protein {ECO:0000313|EMBL:GAN64866.1}; TaxID=1231341 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter orientalis 21F-2.;"
JSantini_Fe8_scaffold_84_17
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13379..13588
DNA (210bp) protein (70aa)
cold shock protein
Cold shock protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPU3_GRABC
Transcriptional regulator cold shock protein DNA-binding protein {ECO:0000313|EMBL:GAN76583.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
JSantini_Fe8_scaffold_84_18
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13951..14610
DNA (660bp) protein (220aa)
Phosphatidylethanolamine N-methyltransferase (EC:2.1.1.17 2.1.1.71)
Phosphatidylethanolamine N-methyltransferase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPU4_GRABC
Phosphatidylethanolamine N-methyltransferase {ECO:0000313|EMBL:ABI63158.1}; EC=2.1.1.17 {ECO:0000313|EMBL:ABI63158.1};; EC=2.1.1.71 {ECO:0000313|EMBL:ABI63158.1};; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
JSantini_Fe8_scaffold_84_19
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14717..14983)
DNA (267bp) protein (89aa)
acylphosphatase
Acylphosphatase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RST4_9PROT
Acylphosphatase {ECO:0000256|SAAS:SAAS00255930}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
JSantini_Fe8_scaffold_84_20
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15009..15707)
DNA (699bp) protein (233aa)
Chaperone, ATP12 family protein
ATP12 chaperone protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RST3_9PROT
ATP12 chaperone protein {ECO:0000313|EMBL:EFH09635.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
JSantini_Fe8_scaffold_84_21
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15715..17436)
DNA (1722bp) protein (574aa)
AsmA family protein
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037B6278
AsmA family protein {ECO:0000313|EMBL:BAJ82357.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
JSantini_Fe8_scaffold_84_22
Tanticharoenia sakaeratensis, Tanticharoenia, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17433..18407)
DNA (975bp) protein (325aa)
pseudouridine synthase, RluA family protein
pseudouridine synthase n=1 Tax=Gluconacetobacter oboediens RepID=UPI000237F334
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1231623 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Tanticharoenia.;" source="Tanticharoenia sakaeratensis NBRC 103193.;"
JSantini_Fe8_scaffold_84_23
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18404..19771)
DNA (1368bp) protein (456aa)
rarA; replication-associated recombination protein A
Recombination factor protein RarA n=1 Tax=Acidiphilium sp. PM RepID=F7S6D2_9PROT
Replication-associated recombination protein A {ECO:0000313|EMBL:KDM66468.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
JSantini_Fe8_scaffold_84_24
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19764..20471)
DNA (708bp) protein (236aa)
metallophosphoesterase
phosphatase n=2 Tax=Gluconacetobacter europaeus RepID=UPI0002D66800
Phosphatase {ECO:0000313|EMBL:GAN78419.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
JSantini_Fe8_scaffold_84_25
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20468..21913)
DNA (1446bp) protein (482aa)
phr; deoxyribodipyrimidine photo-lyase (EC:4.1.99.3)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003698C1C
Deoxyribodipyrimidine photo-lyase Phr {ECO:0000313|EMBL:KDM65574.1}; EC=4.1.99.3 {ECO:0000313|EMBL:KDM65574.1};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
JSantini_Fe8_scaffold_84_26
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22099..22857
DNA (759bp) protein (253aa)
hypothetical protein
Phosphohydrolase (MutT/nudix family protein) n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BQW8_GRABC
Phosphohydrolase (MutT/nudix family protein) {ECO:0000313|EMBL:ABI62784.1}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
JSantini_Fe8_scaffold_84_27
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22851..24416
DNA (1566bp) protein (522aa)
integral membrane protein MviN
Integral membrane protein MviN n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FXA4_ACICJ
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
JSantini_Fe8_scaffold_84_28
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24463..26808)
DNA (2346bp) protein (782aa)
ATP-dependent clp protease ATP-binding subunit clpA
ATP-dependent Clp protease ATP-binding protein n=1 Tax=Roseomonas sp. B5 RepID=UPI000318A6D2
ATP-dependent Clp protease ATP-binding subunit ClpA {ECO:0000313|EMBL:GAN78114.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
JSantini_Fe8_scaffold_84_29
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26974..27312)
DNA (339bp) protein (113aa)
clpS; ATP-dependent Clp protease adaptor protein ClpS
ATP-dependent Clp protease adapter protein ClpS n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RJ93_9PROT
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
Displaying items 1-30 of 40 in total

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