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JSantini_Fe8_scaffold_21

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Displaying items 1-30 of 115 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_Fe8_scaffold_21_1
unknown

Not on your lists

comp(1..126)
DNA (126bp) protein (42aa)

This feature has no annotations

JSantini_Fe8_scaffold_21_2
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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225..875
DNA (651bp) protein (217aa)
glycoside hydrolase
glycosyl transferase family 1 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625293
Glycosyl transferase, group 1 family protein {ECO:0000313|EMBL:ACK79960.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe8_scaffold_21_3

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891..2069
DNA (1179bp) protein (393aa)
glycoside hydrolase
glycosyl transferase family 1 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625292
Glycosyltransferase {ECO:0000313|EMBL:CBI04119.1}; EC=2.4.-.- {ECO:0000313|EMBL:CBI04119.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe8_scaffold_21_4

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comp(2102..2851)
DNA (750bp) protein (250aa)
type IV pilus assembly PilZ
type IV pilus assembly PilZ n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625291
Uncharacterized protein {ECO:0000313|EMBL:CBI05325.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe8_scaffold_21_5
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2857..3801)
DNA (945bp) protein (315aa)
UTP-glucose-1-phosphate uridylyltransferase
UTP-glucose-1-phosphate uridylyltransferase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625290
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_21_6

Not on your lists

4148..4387
DNA (240bp) protein (80aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262528E
Uncharacterized protein {ECO:0000313|EMBL:CBI04636.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe8_scaffold_21_7

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comp(4476..5240)
DNA (765bp) protein (255aa)
HAD-superfamily hydrolase
CbbY n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262528D
Protein CbbY {ECO:0000313|EMBL:CBI04384.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe8_scaffold_21_8

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5361..5825
DNA (465bp) protein (155aa)
dksA; dnaK suppressor protein
molecular chaperone DnaK n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262528C
DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein {ECO:0000313|EMBL:CBI04385.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe8_scaffold_21_9
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5832..7175)
DNA (1344bp) protein (448aa)
tilS; tRNA(Ile)-lysidine synthetase (EC:6.-.-.-)
tRNA(Ile)-lysidine synthetase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262528B
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043112};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe8_scaffold_21_10

Not on your lists

comp(7153..8103)
DNA (951bp) protein (317aa)
accA; acetyl-CoA carboxylase, carboxyl transferase subunit alpha (EC:6.4.1.2)
acetyl-CoA carboxylase subunit alpha n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262528A
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) {ECO:0000313|EMBL:CBI04388.1}; EC=6.4.1.2 {ECO:0000313|EMBL:CBI04388.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe8_scaffold_21_11
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8134..11640)
DNA (3507bp) protein (1169aa)
DNA polymerase III subunit alpha
DNA polymerase III subunit alpha n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625289
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_21_12
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11637..12212)
DNA (576bp) protein (192aa)
ribonuclease HII/HIII
ribonuclease HII n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625288
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_21_13
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12281..13408)
DNA (1128bp) protein (376aa)
lipid-A-disaccharide synthase
sugar synthetase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625287
Lipid-A-disaccharide synthase {ECO:0000313|EMBL:AEM47466.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_21_14
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13413..14522)
DNA (1110bp) protein (370aa)
DegT/DnrJ/EryC1/StrS aminotransferase
DegT/DnrJ/EryC1/StrS aminotransferase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625286
DegT/DnrJ/EryC1/StrS aminotransferase {ECO:0000313|EMBL:AEM47465.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_21_15
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14571..15512)
DNA (942bp) protein (314aa)
oxidoreductase domain-containing protein
oxidoreductase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625285
Oxidoreductase domain protein {ECO:0000313|EMBL:AEM47464.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_21_16
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15509..16291)
DNA (783bp) protein (261aa)
acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase
UDP-N-acetylglucosamine acyltransferase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625284
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00387, ECO:0000256|SAAS:SAAS00064156}; Short=UDP-N-acetylglucosamine acyltransferase {ECO:0000256|HAMAP-Rule:MF_00387};; EC=2.3.1.129 {ECO:0000256|HAMAP-Rule:MF_00387, ECO:0000256|SAAS:SAAS00001267};; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_21_17

Not on your lists

comp(16288..16737)
DNA (450bp) protein (150aa)
beta-hydroxyacyl-(ACP) dehydratase FabZ
3-hydroxyacyl-ACP dehydratase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625283
(3R)-hydroxymyristol acyl carrier protein dehydratase {ECO:0000313|EMBL:CBI04327.1}; EC=4.2.1.- {ECO:0000313|EMBL:CBI04327.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe8_scaffold_21_18
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16727..17791)
DNA (1065bp) protein (355aa)
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026251A6
UDP-3-O-acylglucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_00523};; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_21_19

Not on your lists

comp(17791..18318)
DNA (528bp) protein (176aa)
OmpH family outer membrane protein
membrane protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026251A5
Putative Outer membrane chaperone Skp (OmpH) {ECO:0000313|EMBL:CBI04329.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe8_scaffold_21_20

Not on your lists

comp(18340..20676)
DNA (2337bp) protein (779aa)
OMP85 family outer membrane protein
membrane protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026251A4
Putative Bacterial surface antigen (D15) {ECO:0000313|EMBL:CBI04330.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe8_scaffold_21_21
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20673..22028)
DNA (1356bp) protein (452aa)
membrane-associated zinc metalloprotease
zinc metalloprotease n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026251A3
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; Flags: Precursor;; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_21_22
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22041..23219)
DNA (1179bp) protein (393aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026251A2
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_21_23
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23216..24034)
DNA (819bp) protein (273aa)
phosphatidate cytidylyltransferase
phosphatidate cytidylyltransferase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026251A1
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; Flags: Precursor;; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_21_24
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24016..24780)
DNA (765bp) protein (255aa)
undecaprenyl diphosphate synthase (EC:2.5.1.31)
UDP diphosphate synthase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026251A0
Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.31 {ECO:0000256|HAMAP-Rule:MF_01139};; Ditrans,polycis-undecaprenylcistransferase {ECO:0000256|HAMAP-Rule:MF_01139}; Undecaprenyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_01139}; Undecaprenyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01139}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe8_scaffold_21_25
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24786..25346)
DNA (561bp) protein (187aa)
ribosome-recycling factor
ribosome recycling factor n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262519F
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_21_26
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25343..26014)
DNA (672bp) protein (224aa)
uridylate kinase
uridylate kinase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262519E
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_21_27
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26069..26947)
DNA (879bp) protein (293aa)
elongation factor Ts
endo-1,4-D-glucanase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262519D
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_21_28
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(26977..27729)
DNA (753bp) protein (251aa)
rpsB; 30S ribosomal protein S2
30S ribosomal protein S2 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262519C
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe8_scaffold_21_29
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27921..28523)
DNA (603bp) protein (201aa)
hypothetical protein
membrane protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262519B
SNARE associated protein {ECO:0000313|EMBL:AEM47450.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_21_30
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28554..30065)
DNA (1512bp) protein (504aa)
Ppx/GppA phosphatase
exopolyphosphatase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262519A
Putative Guanosine-5'-triphosphate,3'-diphosphate diphosphatase GppA {ECO:0000313|EMBL:CDQ11410.1}; EC=3.6.1.40 {ECO:0000313|EMBL:CDQ11410.1};; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
Displaying items 1-30 of 115 in total

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