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JSantini_Fe8_scaffold_27

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Displaying items 1-30 of 94 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_Fe8_scaffold_27_1
Acidithiobacillus thiooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..537)
DNA (537bp) protein (179aa)
MotA/TolQ/ExbB proton channel
TonB system transport protein ExbB7 n=2 Tax=Acidithiobacillus thiooxidans RepID=B7SUV3_ACITH
TonB system transport protein ExbB7 {ECO:0000313|EMBL:ACI62915.1}; TaxID=930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus thiooxidans (Thiobacillus thiooxidans).;"
JSantini_Fe8_scaffold_27_2

Not on your lists

comp(605..1414)
DNA (810bp) protein (270aa)
transcriptional regulator
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QBG1_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI04537.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe8_scaffold_27_3
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1551..2957)
DNA (1407bp) protein (469aa)
General substrate transporter
Transporter, putative n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NSR4_9GAMM
General substrate transporter {ECO:0000313|EMBL:AIA56321.1}; TaxID=637389 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus ATCC 51756.;"
JSantini_Fe8_scaffold_27_4
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3058..3573)
DNA (516bp) protein (172aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JNS7_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:AEM47230.1}; Flags: Precursor;; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_27_trna_4
unknown

Not on your lists

comp(3651..3734)
DNA (84bp)
transferRNA Leu
JSantini_Fe8_scaffold_27_5
Acidithiobacillus thiooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4060..6261
DNA (2202bp) protein (734aa)
TonB-dependent receptor
TonB-dependent outer membrane receptor FecA3 n=2 Tax=Acidithiobacillus thiooxidans RepID=B7SUS0_ACITH
TonB-dependent outer membrane receptor FecA3 {ECO:0000313|EMBL:ACI62882.1}; TaxID=930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus thiooxidans (Thiobacillus thiooxidans).;"
JSantini_Fe8_scaffold_27_6
Acidithiobacillus thiooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6329..7006
DNA (678bp) protein (226aa)
MotA/TolQ/ExbB proton channel family protein
TonB system transport protein ExbB2 n=1 Tax=Acidithiobacillus thiooxidans RepID=B7SUS1_ACITH
TonB system transport protein ExbB2 {ECO:0000313|EMBL:ACI62883.1}; TaxID=930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus thiooxidans (Thiobacillus thiooxidans).;"
JSantini_Fe8_scaffold_27_7
Acidithiobacillus thiooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7010..7405
DNA (396bp) protein (132aa)
biopolymer transport protein ExbD/TolR
TonB system transport protein ExbD2 n=1 Tax=Acidithiobacillus thiooxidans RepID=B7SUS2_ACITH
TonB system transport protein ExbD2 {ECO:0000313|EMBL:ACI62884.1}; TaxID=930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus thiooxidans (Thiobacillus thiooxidans).;"
JSantini_Fe8_scaffold_27_8
Acidithiobacillus thiooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7402..8118
DNA (717bp) protein (239aa)
Ferric siderophore transport system, periplasmic binding protein TonB
TonB system transport protein TonB3 n=2 Tax=Acidithiobacillus thiooxidans RepID=B7SUS3_ACITH
TonB system transport protein TonB3 {ECO:0000313|EMBL:ACI62885.1}; TaxID=930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus thiooxidans (Thiobacillus thiooxidans).;"
JSantini_Fe8_scaffold_27_9
Acidithiobacillus thiooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8217..9596
DNA (1380bp) protein (460aa)
putative Metallo-dependent phosphatase
Alkaline phosphatase D n=1 Tax=Acidithiobacillus thiooxidans RepID=B7SUS4_ACITH
Alkaline phosphatase D {ECO:0000313|EMBL:ACI62886.1}; TaxID=930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus thiooxidans (Thiobacillus thiooxidans).;"
JSantini_Fe8_scaffold_27_10
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9699..10994)
DNA (1296bp) protein (432aa)
integral membrane sensor signal transduction histidine kinase
histidine kinase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C60
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_27_11
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10991..11674)
DNA (684bp) protein (228aa)
DNA-binding response regulator
transcriptional regulator n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C5F
DNA-binding response regulator {ECO:0000313|EMBL:EGQ62823.1}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
JSantini_Fe8_scaffold_27_12
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12207..12770
DNA (564bp) protein (188aa)
oligoribonuclease
oligoribonuclease n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C5E
Oligoribonuclease {ECO:0000256|HAMAP-Rule:MF_00045}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00045};; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_27_13
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12777..13025)
DNA (249bp) protein (83aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C5D
Uncharacterized protein {ECO:0000313|EMBL:AEK57320.1}; TaxID=990288 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus (strain SM-1).;"
JSantini_Fe8_scaffold_27_14
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13041..14126
DNA (1086bp) protein (362aa)
Luciferase-like, subgroup
monooxygenase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C5C
Luciferase-like, subgroup {ECO:0000313|EMBL:AEM47225.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_27_15
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14126..15091
DNA (966bp) protein (322aa)
NAD-dependent epimerase/dehydratase
epimerase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C5B
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ACH84178.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe8_scaffold_27_16
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15110..16000
DNA (891bp) protein (297aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C5A
Putative uncharacterized protein {ECO:0000313|EMBL:AEM47223.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_27_17
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16031..16312
DNA (282bp) protein (94aa)
plasmid-like protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C59
Plasmid related protein {ECO:0000313|EMBL:CDQ11168.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_27_18
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16321..17952
DNA (1632bp) protein (544aa)
phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I
phosphoglucomutase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C58
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I {ECO:0000313|EMBL:AEM47221.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_27_19
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17968..18327
DNA (360bp) protein (120aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C57
Uncharacterized protein {ECO:0000313|EMBL:CDQ11166.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_27_trna_1
unknown

Not on your lists

18362..18435
DNA (74bp)
transferRNA Pro
JSantini_Fe8_scaffold_27_20
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18491..22351)
DNA (3861bp) protein (1287aa)
purL; phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
phosphoribosylformylglycinamidine synthase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C56
Phosphoribosylformylglycinamidine synthase {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00419};; Short=FGAMS {ECO:0000256|HAMAP-Rule:MF_00419};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474};; Formylglycinamide ribonucleotide amidotransferase {ECO:0000256|HAMAP-Rule:MF_00419}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe8_scaffold_27_21
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22398..23108)
DNA (711bp) protein (237aa)
phosphoribosylaminoimidazole-succinocarboxamide synthase
phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C55
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_27_22
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23105..24412)
DNA (1308bp) protein (436aa)
purB; adenylosuccinate lyase (EC:4.3.2.2)
adenylosuccinate lyase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C54
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe8_scaffold_27_23
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24409..25533)
DNA (1125bp) protein (375aa)
lipoprotein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C53
Lipoprotein, putative {ECO:0000313|EMBL:AEM48503.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_27_24
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25571..26446)
DNA (876bp) protein (292aa)
dihydrodipicolinate synthase
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JPG3_9GAMM
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_27_25
Aeromonas caviae, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26637..28004
DNA (1368bp) protein (456aa)
metal-dependent phosphohydrolase
metal-dependent phosphohydrolase n=1 Tax=Aeromonas caviae RepID=UPI0002197B9E
Metal-dependent phosphohydrolase {ECO:0000313|EMBL:KGY67741.1}; TaxID=648 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas caviae (Aeromonas punctata).;"
JSantini_Fe8_scaffold_27_trna_3
unknown

Not on your lists

comp(28048..28120)
DNA (73bp)
transferRNA Glu
JSantini_Fe8_scaffold_27_26
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28170..28829)
DNA (660bp) protein (220aa)
hemolysin III family channel protein
Channel protein, hemolysin III family n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JPG4_9GAMM
Channel protein, hemolysin III family {ECO:0000313|EMBL:AEM48505.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_27_27

Not on your lists

comp(28902..29801)
DNA (900bp) protein (300aa)
N-acetylmuramoyl-L-alanine amidase
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D8B
Putative N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CBI06057.1}; EC=3.5.1.28 {ECO:0000313|EMBL:CBI06057.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Displaying items 1-30 of 94 in total

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