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JSantini_Fe8_scaffold_66

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Displaying items 1-30 of 63 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_Fe8_scaffold_66_trna_1
unknown

Not on your lists

comp(184..257)
DNA (74bp)
transferRNA Met
JSantini_Fe8_scaffold_66_1
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(408..1658)
DNA (1251bp) protein (417aa)
ErfK/YbiS/YcfS/YnhG family protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FC5
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:AEM48731.1}; Flags: Precursor;; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_66_2
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1648..1887)
DNA (240bp) protein (80aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FC6
Putative uncharacterized protein {ECO:0000313|EMBL:AEM48732.1}; Flags: Precursor;; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_66_3
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1894..3159)
DNA (1266bp) protein (422aa)
Seryl-tRNA synthetase
seryl-tRNA synthetase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FC7
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_66_4
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3152..4477)
DNA (1326bp) protein (442aa)
ATPase AAA
ATPase AAA n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FC8
AAA ATPase central domain protein {ECO:0000313|EMBL:ACH82803.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe8_scaffold_66_5
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4504..5559)
DNA (1056bp) protein (352aa)
outer membrane protein transport protein, OMPP1/FadL/TodX family
transporter n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FC9
Membrane protein involved in aromatic hydrocarbon degradation {ECO:0000313|EMBL:ACH82802.1}; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe8_scaffold_66_6
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5578..6252)
DNA (675bp) protein (225aa)
outer-membrane lipoprotein carrier protein
cell envelope biogenesis protein LolA n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FCA
Outer-membrane lipoprotein carrier protein {ECO:0000256|HAMAP-Rule:MF_00240, ECO:0000256|SAAS:SAAS00028972}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_66_7
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6224..8554)
DNA (2331bp) protein (777aa)
cell division FtsK/SpoIIIE
cell division protein FtsK n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FCB
Putative DNA translocase ftsK {ECO:0000313|EMBL:CDQ11089.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_66_8
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(8658..10085)
DNA (1428bp) protein (476aa)
hypothetical protein
amino acid transporter, partial n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FCC
Low-affinity putrescine importer PlaP {ECO:0000313|EMBL:KJE77111.1}; TaxID=1121877 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ferrimicrobium.;" source="Ferrimicrobium acidiphilum DSM 19497.;"
JSantini_Fe8_scaffold_66_9

Not on your lists

10296..11009
DNA (714bp) protein (238aa)
arsenical resistance protein ArsH
Arsenical resistance protein ArsH n=6 Tax=root RepID=B5EPD2_ACIF5
Arsenical resistance protein ArsH {ECO:0000313|EMBL:CBI06098.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe8_scaffold_66_10
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11128..12096
DNA (969bp) protein (323aa)
thioredoxin reductase
Thioredoxin reductase n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JR92_9GAMM
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_66_11
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12100..12687
DNA (588bp) protein (196aa)
Smr protein/MutS2
DNA mismatch repair protein MutS n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D5E
Smr protein/MutS2 {ECO:0000313|EMBL:CDQ11086.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_66_12
Thermus thermophilus, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(12684..12890)
DNA (207bp) protein (69aa)
heavy metal binding protein
heavy metal binding protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D5D
Heavy metal transport/detoxification protein {ECO:0000313|EMBL:AEG34130.1}; TaxID=762633 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus thermophilus (strain SG0.5JP17-16).;"
JSantini_Fe8_scaffold_66_13
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12900..13379)
DNA (480bp) protein (160aa)
MerR family transcriptional regulator
MerR family transcriptional regulator n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D5C
Transcriptional regulator, MerR family {ECO:0000313|EMBL:AEM48740.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_66_14
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13448..14536)
DNA (1089bp) protein (363aa)
tRNA pseudouridine synthase D TruD
tRNA pseudouridine synthase D n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D5B
tRNA pseudouridine synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; EC=5.4.99.27 {ECO:0000256|HAMAP-Rule:MF_01082};; tRNA pseudouridine(13) synthase {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA pseudouridylate synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA-uridine isomerase D {ECO:0000256|HAMAP-Rule:MF_01082}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe8_scaffold_66_15
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14529..15008)
DNA (480bp) protein (160aa)
2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D5A
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
JSantini_Fe8_scaffold_66_16
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15008..15721)
DNA (714bp) protein (238aa)
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D59
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000255|HAMAP-Rule:MF_00108}; EC=2.7.7.60 {ECO:0000255|HAMAP-Rule:MF_00108};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000255|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000255|HAMAP-Rule:MF_00108}; Short=MCT {ECO:0000255|HAMAP-Rule:MF_00108};; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe8_scaffold_66_17
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15861..19310
DNA (3450bp) protein (1150aa)
mfd; transcription-repair coupling factor
transcription-repair coupling factor n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D58
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe8_scaffold_66_18
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19307..20419
DNA (1113bp) protein (371aa)
phosphoserine phosphatase SerB (EC:3.1.3.3)
phosphoserine phosphatase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D57
Phosphoserine phosphatase SerB {ECO:0000313|EMBL:ACH82792.1}; EC=3.1.3.3 {ECO:0000313|EMBL:ACH82792.1};; Flags: Precursor;; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe8_scaffold_66_19
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(20416..21327)
DNA (912bp) protein (304aa)
AraC family transcriptional regulator
AraC family transcriptional regulator n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D56
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AEU34481.1}; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8).;"
JSantini_Fe8_scaffold_66_20
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21431..22408)
DNA (978bp) protein (326aa)
NAD-dependent epimerase/dehydratase
epimerase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D55
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ACI50775.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
JSantini_Fe8_scaffold_66_21
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22736..23476
DNA (741bp) protein (247aa)
glutaredoxin-family domain-containing protein (EC:1.11.1.15)
glutathione amide-dependent peroxidase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D54
Glutaredoxin-family domain protein {ECO:0000313|EMBL:ACH82791.1}; EC=1.11.1.15 {ECO:0000313|EMBL:ACH82791.1};; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe8_scaffold_66_22
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23721..25070
DNA (1350bp) protein (450aa)
glutathione-disulfide reductase
glutathione reductase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D53
Glutathione reductase {ECO:0000313|EMBL:ACK77896.1}; EC=1.8.1.7 {ECO:0000313|EMBL:ACK77896.1};; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe8_scaffold_66_23
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25120..25935)
DNA (816bp) protein (272aa)
methylthioadenosine phosphorylase
5''''-methylthioadenosine phosphorylase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D52
Purine nucleoside phosphorylase; EC=2.4.2.44 {ECO:0000256|HAMAP-Rule:MF_01963};; 5'-methylthioinosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_66_24
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25936..26484)
DNA (549bp) protein (183aa)
phosphoribosyltransferase
hypoxanthine phosphoribosyltransferase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D51
Phosphoribosyltransferase {ECO:0000313|EMBL:AEM48750.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_66_25

Not on your lists

comp(26492..26869)
DNA (378bp) protein (126aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D50
Uncharacterized protein {ECO:0000313|EMBL:CBI06545.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe8_scaffold_66_26
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26977..27339)
DNA (363bp) protein (121aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D4F
Uncharacterized protein {ECO:0000313|EMBL:CDQ11073.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_66_27
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27366..27719)
DNA (354bp) protein (118aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D4E
Uncharacterized protein {ECO:0000313|EMBL:CDQ11072.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_66_28
unknown

Not on your lists

comp(27709..27858)
DNA (150bp) protein (50aa)

This feature has no annotations

JSantini_Fe8_scaffold_66_29

Not on your lists

comp(27842..28210)
DNA (369bp) protein (123aa)
dgkA; diacylglycerol kinase (EC:2.7.1.107)
diacylglycerol kinase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D4D
Putative diacylglycerolkinase {ECO:0000313|EMBL:CBI06549.1}; EC=2.7.1.107 {ECO:0000313|EMBL:CBI06549.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Displaying items 1-30 of 63 in total

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