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JSantini_Fe8_scaffold_88

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Displaying items 1-30 of 39 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_Fe8_scaffold_88_1
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..205
DNA (204bp) protein (68aa)
cyoE-1; protoheme IX farnesyltransferase (EC:2.5.1.-)
protoheme IX farnesyltransferase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026249B0
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_Fe8_scaffold_88_2
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

237..1424
DNA (1188bp) protein (396aa)
major facilitator superfamily protein
MFS transporter n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026249AF
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CDQ11069.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_88_3
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1443..2273)
DNA (831bp) protein (277aa)
UDP-diphosphatase
UDP pyrophosphate phosphatase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026249AE
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_88_4
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2298..2774)
DNA (477bp) protein (159aa)
greA; transcription elongation factor GreA
transcription elongation factor GreA n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026249AD
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_88_5
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2793..6011)
DNA (3219bp) protein (1073aa)
carbamoyl-phosphate synthase large subunit
carbamoyl phosphate synthase large subunit n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026249AC
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_88_6
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6004..7146)
DNA (1143bp) protein (381aa)
carbamoyl-phosphate synthase small subunit
carbamoyl phosphate synthase small subunit n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026249AB
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_88_7
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7383..8129
DNA (747bp) protein (249aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JNG5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:CDQ08931.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_88_8
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8187..8663
DNA (477bp) protein (159aa)
TspO and MBR like protein
TspO and MBR like protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JTK9_9GAMM
TspO and MBR like protein {ECO:0000313|EMBL:AEM47860.1}; Flags: Precursor;; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_88_9
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8663..9391
DNA (729bp) protein (243aa)
hypothetical protein
metal-dependent hydrolase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FA7
Putative uncharacterized protein {ECO:0000313|EMBL:AEM48371.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_88_10
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9482..10156
DNA (675bp) protein (225aa)
YceI family protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FA8
YceI family protein {ECO:0000313|EMBL:AEM46459.1}; Flags: Precursor;; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_88_11

Not on your lists

10292..10735
DNA (444bp) protein (148aa)
MarR family transcriptional regulator
MarR family transcriptional regulator n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FA9
Putative bacterial regulatory protein, MarR {ECO:0000313|EMBL:CBI03772.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe8_scaffold_88_12
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10732..12270
DNA (1539bp) protein (513aa)
EmrB/QacA family drug resistance transporter
Drug resistance transporter, EmrB/QacA family n=1 Tax=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) RepID=B7J5H2_ACIF2
Drug resistance transporter, EmrB/QacA family {ECO:0000313|EMBL:ACK79275.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe8_scaffold_88_13

Not on your lists

12270..12701
DNA (432bp) protein (144aa)
universal stress family protein
universal stress protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FAC
UspA domain protein {ECO:0000313|EMBL:CBI03685.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe8_scaffold_88_14
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12855..13307
DNA (453bp) protein (151aa)
chinitase domain-containing protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FAD
Chinitase domain protein {ECO:0000313|EMBL:AEK59390.1}; TaxID=990288 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus (strain SM-1).;"
JSantini_Fe8_scaffold_88_15
unknown

Not on your lists

13416..13643
DNA (228bp) protein (76aa)
chinitase domain-containing protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FAE
JSantini_Fe8_scaffold_88_16
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13690..14286
DNA (597bp) protein (199aa)
chinitase domain-containing protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FAE
Uncharacterized protein {ECO:0000313|EMBL:CDQ10823.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_88_17
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14680..15657
DNA (978bp) protein (326aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FB2
Uncharacterized protein {ECO:0000313|EMBL:CDQ10825.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_88_18
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15710..16741)
DNA (1032bp) protein (344aa)
peptidyl-arginine deiminase
peptidyl-arginine deiminase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FB3
Porphyromonas-type peptidyl-arginine deiminase {ECO:0000313|EMBL:CDQ11347.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_88_19
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16826..17533
DNA (708bp) protein (236aa)
pseudouridine synthase Rsu
ribosomal small subunit pseudouridine synthase A n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FB4
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_88_20

Not on your lists

17536..17985
DNA (450bp) protein (150aa)
NUDIX hydrolase (EC:3.6.-.-)
NUDIX hydrolase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FB5
Putative Nudix hydrolase {ECO:0000313|EMBL:CBI03701.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe8_scaffold_88_21
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18041..18562
DNA (522bp) protein (174aa)
RNA pyrophosphohydrolase
RNA pyrophosphohydrolase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FB6
RNA pyrophosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016246}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016219};; (Di)nucleoside polyphosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00298}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_88_22
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18588..19679)
DNA (1092bp) protein (364aa)
GTP-binding protein YchF
GTP-dependent nucleic acid-binding protein EngD n=1 Tax=mine drainage metagenome RepID=E6Q957_9ZZZZ
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_88_23
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19689..20258)
DNA (570bp) protein (190aa)
peptidyl-tRNA hydrolase
peptidyl-tRNA hydrolase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026249A8
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_88_24
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(20265..20873)
DNA (609bp) protein (203aa)
50S ribosomal protein L25
50S ribosomal protein L25 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026249A7
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00147491}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023359}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_88_25
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20886..22826)
DNA (1941bp) protein (647aa)
penicillin-binding protein 2
penicillin-binding protein 2 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026249A6
Penicillin-binding protein 2, putative {ECO:0000313|EMBL:ACK79924.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_Fe8_scaffold_88_26
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22915..23154
DNA (240bp) protein (80aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026249A5
Putative uncharacterized protein {ECO:0000313|EMBL:AEM47410.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_88_27
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23174..23488
DNA (315bp) protein (105aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026249A3
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_Fe8_scaffold_88_28
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23610..24308
DNA (699bp) protein (233aa)
5-formyltetrahydrofolate cyclo-ligase
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026249A2
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_Fe8_scaffold_88_29

Not on your lists

comp(24336..24983)
DNA (648bp) protein (216aa)
Lysine exporter protein LYSE/YGGA
amino acid transporter n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026249A1
Putative Transporter, LysE family {ECO:0000313|EMBL:CBH98165.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_Fe8_scaffold_88_30
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24980..26755)
DNA (1776bp) protein (592aa)
peptidase M61 domain-containing protein
signal protein PDZ n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026249A0
Peptidase M61 domain protein {ECO:0000313|EMBL:CDQ11375.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
Displaying items 1-30 of 39 in total

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