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JSantini_S4_scaffold_99

Search features with annotation key words

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_S4_scaffold_99_1
Ferroplasma sp. Type II, Ferroplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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101..1018
DNA (918bp) protein (306aa)
transposase
Transposase (IS4) n=1 Tax=Ferroplasma sp. Type II RepID=T0NDZ1_9EURY
Transposase (IS4) {ECO:0000313|EMBL:EQB73431.1}; TaxID=261388 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Ferroplasmaceae; Ferroplasma; environmental samples.;" source="Ferroplasma sp. Type II.;"
JSantini_S4_scaffold_99_2
Ferroplasma acidarmanus, Ferroplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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comp(1030..1854)
DNA (825bp) protein (275aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Ferroplasma acidarmanus fer1 RepID=S0ALV8_FERAC
Uncharacterized protein {ECO:0000313|EMBL:AGO59991.1}; TaxID=333146 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Ferroplasmaceae; Ferroplasma.;" source="Ferroplasma acidarmanus fer1.;"
JSantini_S4_scaffold_99_3
Ferroplasma acidarmanus, Ferroplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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comp(2164..4827)
DNA (2664bp) protein (888aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Ferroplasma acidarmanus fer1 RepID=S0APK4_FERAC
Uncharacterized protein {ECO:0000313|EMBL:AGO59990.1}; TaxID=333146 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Ferroplasmaceae; Ferroplasma.;" source="Ferroplasma acidarmanus fer1.;"
JSantini_S4_scaffold_99_4
Ferroplasma acidarmanus, Ferroplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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5463..6188
DNA (726bp) protein (242aa)
CRISPR-associated Cas6 family protein
CRISPR-associated Cas6 family protein n=1 Tax=Ferroplasma acidarmanus fer1 RepID=S0AP67_FERAC
CRISPR-associated endoribonuclease {ECO:0000256|PIRNR:PIRNR005054}; TaxID=333146 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Ferroplasmaceae; Ferroplasma.;" source="Ferroplasma acidarmanus fer1.;"
JSantini_S4_scaffold_99_5
Ferroplasma acidarmanus, Ferroplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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6185..7732
DNA (1548bp) protein (516aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Ferroplasma acidarmanus fer1 RepID=S0AKV1_FERAC
Uncharacterized protein {ECO:0000313|EMBL:AGO59988.1}; TaxID=333146 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Ferroplasmaceae; Ferroplasma.;" source="Ferroplasma acidarmanus fer1.;"
JSantini_S4_scaffold_99_6
Ferroplasma acidarmanus, Ferroplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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7722..8630
DNA (909bp) protein (303aa)
CRISPR-associated autoregulator DevR family protein
CRISPR-associated autoregulator DevR family protein n=1 Tax=Ferroplasma acidarmanus fer1 RepID=S0AMK9_FERAC
CRISPR-associated autoregulator DevR family protein {ECO:0000313|EMBL:AGO59987.1}; TaxID=333146 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Ferroplasmaceae; Ferroplasma.;" source="Ferroplasma acidarmanus fer1.;"
JSantini_S4_scaffold_99_7
Ferroplasma acidarmanus, Ferroplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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8617..9330
DNA (714bp) protein (238aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Ferroplasma acidarmanus fer1 RepID=S0ALV2_FERAC
Uncharacterized protein {ECO:0000313|EMBL:AGO59986.1}; TaxID=333146 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Ferroplasmaceae; Ferroplasma.;" source="Ferroplasma acidarmanus fer1.;"
JSantini_S4_scaffold_99_8
Ferroplasma acidarmanus, Ferroplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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9314..11554
DNA (2241bp) protein (747aa)
CRISPR-associated helicase Cas3
CRISPR-associated helicase Cas3 n=1 Tax=Ferroplasma acidarmanus fer1 RepID=S0APJ8_FERAC
CRISPR-associated helicase Cas3 {ECO:0000313|EMBL:AGO59985.1}; TaxID=333146 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Ferroplasmaceae; Ferroplasma.;" source="Ferroplasma acidarmanus fer1.;"
JSantini_S4_scaffold_99_9
Ferroplasma acidarmanus, Ferroplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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11566..12063
DNA (498bp) protein (166aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Ferroplasma acidarmanus fer1 RepID=S0AP60_FERAC
Uncharacterized protein {ECO:0000313|EMBL:AGO59984.1}; TaxID=333146 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Ferroplasmaceae; Ferroplasma.;" source="Ferroplasma acidarmanus fer1.;"
JSantini_S4_scaffold_99_10
Ferroplasma acidarmanus, Ferroplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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12066..13052
DNA (987bp) protein (329aa)
hypothetical protein
CRISPR-associated endonuclease Cas1 n=1 Tax=Ferroplasma acidarmanus fer1 RepID=S0AKU9_FERAC
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=333146 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Ferroplasmaceae; Ferroplasma.;" source="Ferroplasma acidarmanus fer1.;"
JSantini_S4_scaffold_99_11
Ferroplasma acidarmanus, Ferroplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

13054..13317
DNA (264bp) protein (88aa)
hypothetical protein
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Ferroplasma acidarmanus fer1 RepID=S0AMK4_FERAC
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=333146 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Ferroplasmaceae; Ferroplasma.;" source="Ferroplasma acidarmanus fer1.;"
JSantini_S4_scaffold_99_12
CG_Pacearch_04, Pacearchaeota, Archaea

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15919..18960
DNA (3042bp) protein (1014aa)
restriction enzyme methylase subunit
Restriction enzyme methylase subunit n=1 Tax=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) RepID=C0R109_BRAHW
Tax=CG_Pacearch_04
JSantini_S4_scaffold_99_13
unknown

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comp(19695..19802)
DNA (108bp) protein (36aa)

This feature has no annotations

JSantini_S4_scaffold_99_14
unknown

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20957..22045
DNA (1089bp) protein (363aa)

This feature has no annotations

JSantini_S4_scaffold_99_15
unknown

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comp(22287..22556)
DNA (270bp) protein (90aa)

This feature has no annotations

JSantini_S4_scaffold_99_16
unknown

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comp(22573..22803)
DNA (231bp) protein (77aa)

This feature has no annotations

JSantini_S4_scaffold_99_17

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22931..23230
DNA (300bp) protein (100aa)
Transposase
Uncharacterized protein n=2 Tax=Myroides odoratimimus RepID=H1GQ18_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:AKA48363.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
JSantini_S4_scaffold_99_18
unknown

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23236..23439
DNA (204bp) protein (68aa)

This feature has no annotations

JSantini_S4_scaffold_99_19

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23439..24173
DNA (735bp) protein (245aa)
putative transposase for insertion sequence element
Integrase catalytic region n=2 Tax=mine drainage metagenome RepID=T0XY68_9ZZZZ
Integrase catalytic region {ECO:0000313|EMBL:EQD25868.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_S4_scaffold_99_20
Thermoplasma volcanium, Thermoplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

24905..25705
DNA (801bp) protein (267aa)
SAM-dependent methyltransferase
Uncharacterized protein n=2 Tax=Thermoplasma volcanium RepID=Q97AC2_THEVO
Uncharacterized protein {ECO:0000313|EMBL:BAB60030.1}; TaxID=273116 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Thermoplasmataceae; Thermoplasma.;" source="Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC; 15438 / GSS1).;"
Displaying 20 items

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